Pairwise Alignments

Query, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 658 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

 Score =  348 bits (894), Expect = e-100
 Identities = 232/686 (33%), Positives = 339/686 (49%), Gaps = 63/686 (9%)

Query: 6   FQLKVDGLEDESLVVRGFEGQESLSDSVWRCEPCYGFRYQVDLASALSNLTAEQFVDQTA 65
           F L +DG E     V  F G ES+S           +R+ ++L S   +L  E  + +  
Sbjct: 10  FTLTLDG-EPSEFKVFEFSGIESISQP---------YRFDIELVSEQPDLDLESLLHRQV 59

Query: 66  HLTILRDGQVVQQINGIVRQLSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQSVPE 125
           +L     G+ V   +G+V ++++GD+G R T Y +TLVP L  L   S+ RIFQ ++VP+
Sbjct: 60  YLGFDDRGRGV---HGLVYRMAQGDSGRRLTRYQMTLVPQLAYLGHSSHQRIFQHKTVPQ 116

Query: 126 IISILLQEMGIED--YAFALKRECAQREFCVQYRETDLQFLHRIAAEEGLVYSHLHEAQK 183
           I++ +L+  GI+   + F L     +RE+CVQ+ ETDL F+ R+ AE G+ Y   H +  
Sbjct: 117 IVAQVLEGQGIQRDRFEFRLSGTYPEREYCVQFGETDLAFIQRLCAELGIHYHFQHSSAG 176

Query: 184 HTLLFTDSSDSQPKLAKPVPYNALAGGEINLPYVVDLQFKTTAQVSHTELKDYSFKKPAY 243
           H L+F D      +   P PY   +G   + P +     +  A+ +   L+DY F+KP+ 
Sbjct: 177 HLLVFGDDQTVFVQADPPTPYTPGSGMVADTPVIKRFAVQVQARTTGVNLRDYDFRKPSL 236

Query: 244 GFTQRTQGKDIAYQQPNYEHFDAPGRYKDDANGKAFSQIRLEYLRRDALLADAKSDEPLL 303
                  G+    Q P  E    PG + D A+GK  +Q  LE  R D  +A    DEP L
Sbjct: 237 ALESEVTGE----QLPPLEAQVYPGHFNDRAHGKYLAQRGLERHRSDYRVARGSGDEPAL 292

Query: 304 LAGVRFDLQDHLDHAMNRDWLVVQANHQGTQPQALQEE-----GGSGATTYSNQLKLIPA 358
            +G    L  H     N  WLV    H+G QPQ L+E      GG     Y N+    P 
Sbjct: 293 GSGRFLKLAGHPREDWNDLWLVTHVTHEGLQPQVLEESVTEVAGGDFRQGYRNEFSATPW 352

Query: 359 HITWRARPCAKPQ--VDGPMIATVVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKSSCWV 416
              +R     +P+  + G   A V GP   EI+CD +GRVKV   WDR    N+ SSCW+
Sbjct: 353 DAIFRPPMPEQPRPTIAGYQNAVVTGPADSEIHCDEYGRVKVQLVWDRDGEHNDHSSCWL 412

Query: 417 RVAQEWAGSQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHATNTAPYALPDHKTKTV 476
           RVA  WA  +YGS+ IPRVG EV+V F+NGD D P++ G   +A    P  LP  KT++V
Sbjct: 413 RVASGWAHDRYGSVLIPRVGMEVLVGFVNGDMDMPLVMGCLPNAATQVPLDLPADKTRSV 472

Query: 477 LRTETHQ-GQGYNELSFEDQAGSEQILLHAQKDWDALIEHDHTEVIRHDQHLTVDNDRFT 535
            R+++   G GYNEL  ED+ G+E+I L AQ+DW        T+ + HD  + VD +   
Sbjct: 473 FRSQSSPGGGGYNELRIEDRKGAEEIYLRAQRDW--------TQHVLHDLRVNVDGESHH 524

Query: 536 RIQRNQHLTVEGEVRSKIALDSSHEVGASLQHKVGQRIAVEAGKEISLKSGAKIVVEAGA 595
            +Q  +     G   + +  D    VG S Q        V AG+ I + +G  +V+E GA
Sbjct: 525 ELQGEELRITHGNRLTDLKQDDHLMVGGSRQ--------VRAGQTIQIGAGQSVVIEGGA 576

Query: 596 ELTLKAGGSFVKVDAGGVHLVGPAINLNAGGSAGSGSAYGGQLAAAPRMLAQAKPVAELV 655
            +T++AGG  + + AGG+    P                  QL +AP   A A P+   +
Sbjct: 577 TVTIQAGGQSITLCAGGIFSSVPI-----------------QLGSAP--AATAAPLTPGL 617

Query: 656 QPDIAASMQSGAARVIDVASLPTMMP 681
           +  + A + +  +RV  VASL    P
Sbjct: 618 KETVLAVIPAPLSRV-QVASLKRSAP 642