Pairwise Alignments

Query, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

 Score =  359 bits (921), Expect = e-103
 Identities = 232/644 (36%), Positives = 337/644 (52%), Gaps = 46/644 (7%)

Query: 15  DESLVVRGFEGQESLSDSVWRCEPCYGFRYQVDLASALSNLTAEQFVDQTAHLTILRDGQ 74
           D  L V  F+G E L            F   + + S   +L  E  + Q A+L     G+
Sbjct: 18  DIDLQVLAFKGSEVLDQP---------FFIHIQVVSENPSLDLEALLHQPAYLAF---GE 65

Query: 75  VVQQINGIVRQLSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQSVPEIISILLQEM 134
               ++G V  + + D G R T Y LTL P L  L+ R + RIFQQ+SVP+II+ +L++ 
Sbjct: 66  ADDGLHGQVYAIGRDDPGRRTTRYHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQH 125

Query: 135 GI--EDYAFALKREC-AQREFCVQYRETDLQFLHRIAAEEGLVYSHLHEAQKHTLLFTDS 191
           GI  + YAF L       R FCVQY E+DL F+ R+  EEG+ Y   H    H L+F D 
Sbjct: 126 GILADAYAFELGPVVYPPRTFCVQYAESDLHFIQRLCEEEGIHYHFRHSVDAHLLVFGDD 185

Query: 192 SDSQPKLAKPVP-YNALAGGEINLPYVVDLQFKTTAQVSHTELKDYSFKKPAYGFTQRTQ 250
               P+L  PV  Y+A  G   + P +     +   +   T  +DY F+ P+        
Sbjct: 186 QTVFPRL--PVQCYSAPGGPHADTPVIQRFDVRLGIRSQKTVRRDYDFEHPSVHLHDSAG 243

Query: 251 GKDIAYQQPNYEHFDAPGRYKDDANGKAFSQIRLEYLRRDALLADAKSDEPLLLAGVRFD 310
               A      E +  P  +     GK  ++  LE  +RD   A  KSD+P+L +G   +
Sbjct: 244 ----AASTLPLEDYQYPAGFTAHTRGKQLARRSLELHQRDRYRALGKSDQPVLRSGHFLE 299

Query: 311 LQDHLDHAMNRDWLVVQANHQGTQPQALQEEGGSGATT----YSNQLKLIPAHITWRA-- 364
           ++DH D + N  WL+    H+G QPQ L+E   + AT     Y N+    P    W+A  
Sbjct: 300 IRDHPDPSCNDLWLITSVRHEGYQPQVLEE--ATPATDVFQGYRNRFTATP----WQAVH 353

Query: 365 RPC---AKPQVDGPMIATVVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKSSCWVRVAQE 421
           RP     KP ++G   ATV GP GE+++CD +GRVKV F WDR   +++KSSCW+RVA  
Sbjct: 354 RPSLRHTKPTINGSQTATVTGPAGEDVHCDVYGRVKVRFHWDRLDEADDKSSCWLRVASG 413

Query: 422 WAGSQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHATNTAPYALPDHKTKTVLRTET 481
           WAG  +G+  IPRVG EV+V+FL+GDPD+P+I G   +A +   Y LP HKT++VLR+ +
Sbjct: 414 WAGDGFGATMIPRVGMEVLVTFLDGDPDRPLINGCLPNALHRPTYPLPLHKTRSVLRSSS 473

Query: 482 H-QGQGYNELSFEDQAGSEQILLHAQKDWDALIEHDHTEVIRHDQHLTVDNDRFTRIQRN 540
              G+G NEL  ED+ G E + L AQ+D +  I HD    +  ++   +     T ++  
Sbjct: 474 SLGGEGSNELYLEDRRGEELVYLRAQRDLEQRIGHDSRLEVAGERQEVIHGISTTHLKSE 533

Query: 541 QHLTVEGEVRSKIALDSSHEVGASLQHKVGQRIAVEAGKEISLKSGAKIVVEAGAELTLK 600
           +H  V G+ +  +      +V    +  V Q + +EAG+++ LKSGA +V++AGAEL+LK
Sbjct: 534 EHRQVTGDRKVLLKASDYLDVHGDSRTHVAQTLVIEAGQQLHLKSGASLVIDAGAELSLK 593

Query: 601 AGGSFVKVDAGGVHLVGPAINLNAGGSAGSGSAYGGQLAAAPRM 644
           AGG  + + AGG+    P         A  GSA   QLA A R+
Sbjct: 594 AGGEHLVIQAGGIFSSRPI--------ALGGSASVTQLAGAFRV 629