Pairwise Alignments

Query, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 788 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  223 bits (568), Expect = 4e-62
 Identities = 159/521 (30%), Positives = 256/521 (49%), Gaps = 35/521 (6%)

Query: 13  LEDESLVVRGFEGQESLSDSVWRCEPCYGFRYQVDLASALSNLTAEQFVDQTAHLTILRD 72
           L ++ L+ R   G E LS           F ++VDL S  + +  +  + +   L I   
Sbjct: 11  LAEDQLMFRSMNGTEGLSRL---------FDFEVDLLSPSAAIDLQSVLGKPLSLEIKTA 61

Query: 73  GQVVQQINGIVRQLSKGDTGH--RHTFYSLTLVPALERLSLRSNSRIFQQQSVPEIISIL 130
           G        +VR    G  G   RHT Y  ++ P+L  L+  S  RIFQ ++V E++  +
Sbjct: 62  GAPRFLSGQVVRFSMIGREGRTSRHTVYRASVRPSLWYLTRTSGFRIFQNKTVVEMLEEV 121

Query: 131 LQEMGIEDYAFALKRECAQR--EFCVQYRETDLQFLHRIAAEEGLVYSHLHEAQKHTLLF 188
             +    D+AF  K   + R  E C QY E+D  F+ R+   EG+ Y   HE  +HTL+ 
Sbjct: 122 FADY---DFAFEKKLTASYRQWEHCAQYNESDFAFVSRLMELEGIYYYFKHEQNEHTLVL 178

Query: 189 TDSSDSQPKLA--KPVPYNALAGGEINLPYVVDLQFKTTAQV--SHTELKDYSFKKPAYG 244
            D   +   +   + + Y A +  E+     V  +++ T +V      + D++F  P   
Sbjct: 179 ADDIGAHEPMPGYETIDYFA-SDREVTEDIEVIDEWRVTGEVRTGRYTVDDFNFTTPGSD 237

Query: 245 FTQRTQGKDIAYQQPNYEHFDAPGRYKDDANGKAFSQIRLEYLRRDALLADAKSDEPLLL 304
            T   + +   +   +YE ++  G Y +   G+ ++++RLE  +     ++  +    + 
Sbjct: 238 LTN-VRSQPQPHDHADYEMYEWLGEYTNAGEGEHYARVRLEEAQALGERSEGHATVRGMA 296

Query: 305 AGVRFDLQDHLDHAMNRDWLVVQANHQGTQPQALQEEG---GSGATTYSNQLKLIPAHIT 361
            G +F ++       NR++L+V   +      AL+E G   G     Y       P  + 
Sbjct: 297 PGYKFTMRGSAREEDNREYLIVSVAY------ALREGGYASGVEQGEYGFGFVAQPTSLP 350

Query: 362 WRA-RPCAKPQVDGPMIATVVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKSSCWVRVAQ 420
           +RA R  + P+  GP  A VVGP+G+EI+ D +GRVKV F WDR    NE  SC+VRV+Q
Sbjct: 351 YRAPRVTSVPRTSGPQTAVVVGPEGKEIWTDQYGRVKVQFRWDRSGRRNENCSCFVRVSQ 410

Query: 421 EWAGSQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHATNTAPYALPDHKTKTVLRTE 480
            +AG  +G++  PR+G EVIV F+ G  D+PIITGR Y+  +  P+ LP   TK+ L T 
Sbjct: 411 VFAGDGFGAVFTPRIGQEVIVDFIGGLADRPIITGRVYNPRHMPPFDLPGEDTKSGLVTR 470

Query: 481 THQGQG---YNELSFEDQAGSEQILLHAQKDWDALIEHDHT 518
           +  G      N L FED+ G+E + LHA+++ +  +E D T
Sbjct: 471 STPGGSPATANSLVFEDRIGAEFVALHAERNLNVSVEADET 511