Pairwise Alignments

Query, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 884 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  214 bits (546), Expect = 2e-59
 Identities = 183/650 (28%), Positives = 283/650 (43%), Gaps = 68/650 (10%)

Query: 79  INGIVRQLSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQSVPEIISILLQEMGIED 138
           + GIV          R +FY + L P L   + RS+ R+FQ+++VPEII+ +L   G   
Sbjct: 66  LGGIVTSFGLAQEDARRSFYKMRLRPWLWLATRRSDFRVFQERTVPEIITAVLARYG--- 122

Query: 139 YAFALKRECAQR--EFCVQYRETDLQFLHRIAAEEGLVYSHLHEAQKHTLLFTDS----- 191
           Y    K   + R   +CVQY E D  F+ R+   EG+ +   HEA +H L+F D      
Sbjct: 123 YPMEQKLRHSYRAWNYCVQYGEDDCSFIARLCEHEGIHFHFRHEADRHVLVFADDIAGSH 182

Query: 192 ---SDSQPKLAKPVPYNALAGGEINLPYVVDLQFKTTAQVSHTELKDYSFKKPAYGFTQR 248
                 +     P   + + GG      + + +     +        + F+ P       
Sbjct: 183 GPLPGGETVRYHPHEQSGMTGGPEPGERIHEWELVEEVRSGRHYRSHFDFEHP------- 235

Query: 249 TQGKDIAYQQ---PNYEH-----FDAPGRYKDDANGKAFSQIRLEYLRRDALLADAKSDE 300
             G D+++ +   P +EH     ++ PG +    +G+  ++IR E        A  +S+ 
Sbjct: 236 --GADLSFMRRASPGHEHDDHELYEWPGNHVRHDDGETCARIRNEEQLSGRSRARGRSNL 293

Query: 301 PLLLAGVRFDLQDHLDHAMNRDWLVVQANHQGTQPQALQEEGGSGATTYSN-QLKLIPAH 359
             L  G    L  H     NR +L++  ++   +     E  G    ++       +P  
Sbjct: 294 RELAPGHTMRLTGHPRADQNRQYLLLGVSYHLRENLEASEGTGHAEGSFQRFAFDALPTS 353

Query: 360 ITWRA-RPCAKPQVDGPMIATVVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKSSCWVRV 418
             WR  R   KP+ DGP  A VVGP GEEI+ D +GRVKV F WDR    +E +SCWVRV
Sbjct: 354 CAWRPPRTTPKPRTDGPQTALVVGPAGEEIWTDRYGRVKVRFHWDRLGRHDEHASCWVRV 413

Query: 419 AQEWAGSQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHATNTAPYALPDHKTKTVLR 478
           +  WAG+ +G+ A+PR+G EVIV FLNGDPD PIITGR ++A     + LP     + +R
Sbjct: 414 STSWAGAAFGAAALPRIGQEVIVDFLNGDPDFPIITGRVHNADEMPAWQLPGQAHLSGIR 473

Query: 479 TETHQGQGYNELSFEDQAGSEQILLHAQKDWDAL-------IEHDHTEVIRHDQHLTVDN 531
           +    G   N L+ +D  G  Q  L +     +L       IE          Q   +  
Sbjct: 474 SREPGGGRSNHLALDDTNGKVQAQLRSDHQSSSLGLGHIARIEDTAGRKEDRGQGFELRT 533

Query: 532 DRFTRIQRNQHLTVEGEVRSKI---ALDSSHEV-----GASLQHKVGQRI----AVEAGK 579
           D    I+ ++ L +  E R       +D    V     G +L  ++ +      A EAG 
Sbjct: 534 DGHGAIRASEGLLITTEARGNAQAHIIDMGETVARLADGQALHERLSKAAREAKAHEAGD 593

Query: 580 E----ISLKSGAKIVVEAGAELTLKAGGSFVKVDAGGVHLVGPA-INLNAGGSA-----G 629
           +    + LK+    +  +G +    A G F ++ A  + L  PA I   A GS      G
Sbjct: 594 QDTVAMELKAQHDEIRGSGGD---PAQGVFPELQAPHLVLASPAGIQTAAEGSTHIVSDG 650

Query: 630 SGSAYGG---QLAAAPRMLAQAKPVAELVQPDIAASMQSGAARVIDVASL 676
             +   G    ++A    L  A+    +V  D    M + AA  ID+++L
Sbjct: 651 HNALTSGAHTSVSAGKSFLVSARSAVRMVALDKGIRMAAAAAD-IDISAL 699