Pairwise Alignments

Query, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 791 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  216 bits (551), Expect = 4e-60
 Identities = 161/547 (29%), Positives = 252/547 (46%), Gaps = 71/547 (12%)

Query: 83  VRQLSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQSVPEIISILLQEMGIEDYAFA 142
           VR +  G  G RH  Y +TL      L+ R+NSRI Q++ V E++  + ++  I+ +   
Sbjct: 79  VRFVRAGHVG-RHYEYRITLRSWFWLLTKRTNSRILQEKKVLEVLDAVFEDSPIKRFKKT 137

Query: 143 LKRECA----QREFCVQYRETDLQFLHRIAAEEGLVYSHLHEAQKHTLLFTDSSD-SQPK 197
                      R +CVQ++E+D  FL R+  +EG+ Y         T+  +D+SD +  K
Sbjct: 138 RADNVIGTHNPRRYCVQHQESDYGFLSRLLEDEGIYYWFDAHGAPGTMHLSDASDIAHEK 197

Query: 198 LAKPVPYNALAGGEINLPY------VVDLQFKTTAQVSHTELKDYSFKKPAYGFTQRTQG 251
           L      + +A       +      V   QF T    S     D+   K   G      G
Sbjct: 198 LPANDTLHHMATDASEARFNEVSRWVSGRQFGTGKHASRDS--DFKAIKKKLGADADASG 255

Query: 252 KDIAYQQPNYEHFDAPGRYKDDANGKAFSQIRLEYLRRDALLADAKSDEPLLLAGVRFDL 311
           +   ++  + E F+ PG Y     G++ +++R + LR       A +  P + AG  F  
Sbjct: 256 E---HELASLEMFEFPGGYFTGDEGESRAKLRGDELRARRDRHWALTPWPDVAAGRGFKF 312

Query: 312 QDHLDHAMNRDWLVVQ----ANHQGTQ-----------------PQALQEEGGSGAT--- 347
           +   D   N ++++      A+H+G +                  + L+++  +  T   
Sbjct: 313 EGDPDGTRNGEYIIAACTFVASHRGYEGVSASAASAARPVQAALAEVLRDDAVNADTLQV 372

Query: 348 -----------------TYSNQLKLIPAHITWRARPCAKPQVD--GPMIATVVGPQGEEI 388
                            T +  L ++PA   +RA P   P+V   GP  A VVGP+G+E+
Sbjct: 373 LEDLIAATPALAAGQPGTSAFLLTVMPADRPFRA-PRLTPRVTMPGPQTAIVVGPKGDEL 431

Query: 389 YCDNFGRVKVHFPWDRYSSSNEKSSCWVRVAQEWAGSQYGSMAIPRVGHEVIVSFLNGDP 448
           + D+ GRVKVHF WDRY  S+EKS+CWVRV+Q WAG  +G    PR+G EVIV FLNGDP
Sbjct: 432 HVDDHGRVKVHFHWDRYDESDEKSTCWVRVSQPWAGKGWGGYFAPRIGQEVIVDFLNGDP 491

Query: 449 DQPIITGRTYHATNTAPYALPDHKTKTVLRTETHQGQGYNELSFEDQAGSEQILLHAQKD 508
           D+PII GR Y+     P+            T       +NE  FED  G EQ+ LHA+++
Sbjct: 492 DRPIIMGRVYNDDQPIPFKSHTQSGFRTRSTPKGNAANFNEFRFEDDKGKEQVYLHAERN 551

Query: 509 WDALIE--------HDHTEVIRHDQHLTVDNDRFTRIQRNQHLTVEGEVRSKIALDSSHE 560
            D  +E        HD T+ + HD+ + + NDR   +  N+ +T+ G  + ++ +D    
Sbjct: 552 LDVEVEADETRNVGHDRTKTVGHDEKVKIKNDRTEEVTGNETITIHG--KRELTVDKDQY 609

Query: 561 VGASLQH 567
           V     H
Sbjct: 610 VTIKTNH 616