Pairwise Alignments

Query, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 771 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

 Score =  441 bits (1134), Expect = e-128
 Identities = 242/643 (37%), Positives = 364/643 (56%), Gaps = 49/643 (7%)

Query: 42  FRYQVDLASALSNLTAEQFVDQTAHLTILRDGQVVQQINGIVRQLSKGDTGHRHTFYSLT 101
           F   ++L S  S++     +D+ A  T+    + ++ ++G+V   S+G+TG   T Y   
Sbjct: 34  FVLNLELVSYESDIDFGHVLDKPALFTLYSADRPLRHVHGLVSAFSQGETGFCRTRYHAV 93

Query: 102 LVPALERLSLRSNSRIFQQQSVPEIISILLQEMGIEDYAFALKRECAQREFCVQYRETDL 161
           + P L R  LRSN RIFQQ++VP+I+ ++ +  GI  +      +   REFCVQ  ETDL
Sbjct: 94  VEPQLARARLRSNWRIFQQKTVPQILELMFKRQGITRFELKSSAQHQVREFCVQAGETDL 153

Query: 162 QFLHRIAAEEGLVYSHLHEAQKHTLLFTDSSDSQPKLAK--------------------- 200
            F+HR+AAEEG VY   H A++HTL+ TD   S   L++                     
Sbjct: 154 DFIHRLAAEEGFVYRFEHCARQHTLIVTDRLLSFGLLSRGALKAEDDEALWLDEDDVGPD 213

Query: 201 PVPYNALAGGEINLPYVVDLQFKTTAQVSHTELKDYSFKKPAYGFTQRTQGKDIAYQQPN 260
            V Y+A +GG+     +  L++    + +    +DY+F  PAY    + Q   + +Q  +
Sbjct: 214 KVLYHASSGGDQARACLRRLRYCEQVRTARQVQRDYTFTNPAYRQEHKAQTSGVTHQSLD 273

Query: 261 YEHFDAPGRYKDDANGKAFSQIRLEYLRRDALLADAKSDEPLLLAGVRFDLQDHLDHAMN 320
           YE FD PGRYK DA GK F++ RL  LR DA LA+ + D+  L  G+ F L  H    +N
Sbjct: 274 YERFDYPGRYKRDAVGKPFTETRLTALRHDACLAEVQGDDVRLQTGLSFTLVGHPREDLN 333

Query: 321 RDWLVVQANHQGTQPQALQEE--GGSGATTYSNQLKLIPAHITWRARPCAKPQVDGPMIA 378
             W V+   H+GTQ  +LQEE  G    T Y N   L+     WR  P AKP++DGP +A
Sbjct: 334 VHWRVISLCHEGTQLTSLQEEAAGAEQGTRYVNDALLVQGMAEWRPAPMAKPRIDGPHMA 393

Query: 379 TVVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKSSCWVRVAQEWAGSQYGSMAIPRVGHE 438
           TVVGP GEEIYCD +GRVKV FPWDR S +NE SSCWV V+Q WAG  +GSMAIPR+G +
Sbjct: 394 TVVGPPGEEIYCDEWGRVKVSFPWDRESKNNEFSSCWVWVSQGWAGGSWGSMAIPRIGQD 453

Query: 439 VIVSFLNGDPDQPIITGRTYHATNTAPYALPDHKTKTVLRTETHQGQGYNELSFEDQAGS 498
           VIV ++NGDPDQP+ITGRTY      PY LPDHKT+  ++++TH+G G+NEL FED+ G 
Sbjct: 454 VIVQYVNGDPDQPMITGRTYCGDQLPPYDLPDHKTRMTIKSQTHKGDGFNELRFEDELGR 513

Query: 499 EQILLHAQKDWDALIEHDHTEVIRHDQHLTVDNDRFTRIQRN------------------ 540
           +++ +HA++D + +++H+ T +I +D+   V++D    I  N                  
Sbjct: 514 QEVFIHAERDQNNVVKHNETTLIGNDRSERVEHDEVVDIGGNRSVKVGASKRETVALGKV 573

Query: 541 ------QHLTVEGEVRSKIALDSSHEVGASLQHKVGQRIAVEAGKEISLKS-GAKIVVEA 593
                 + L V G +   + L+++ +V    + +VG ++ V+A +++S+ S    + +++
Sbjct: 574 ESIGLGKSLAVGGALSVMVGLEATEQVALDKRVQVGGQLRVDADEDVSITSHHGHVHIDS 633

Query: 594 GAELTLKAGGSFVKVDAGGVHLVGP-AINLNAGGSAGSGSAYG 635
              LTL  GG+F+K+  G + +  P  + L+A     + + YG
Sbjct: 634 RTSLTLSCGGAFIKLSDGRIEIGCPEPLLLHAIAQVKAPARYG 676