Pairwise Alignments

Query, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 618 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score =  261 bits (666), Expect = 1e-73
 Identities = 177/605 (29%), Positives = 299/605 (49%), Gaps = 33/605 (5%)

Query: 15  DESLVVRGFEGQESLSDSVWRCEPCYGFRYQVDLASALSNLTAEQFVDQTAHLTILRDGQ 74
           ++  ++  F G E LS           + + + L S  S++  +  +   A + I     
Sbjct: 27  NDEFLLEHFSGTEELSKL---------YEFDLALLSQQSDVKLKSLIGSQATVEIELSNG 77

Query: 75  VVQQINGIVRQLSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQSVPEIISILLQEM 134
             + ING V++ S   +   +  Y+  L P L  L+ R ++RIFQ++SV  ++S +    
Sbjct: 78  SFRHINGYVQRFSTQGSDGGYVRYAAVLGPWLWMLTCRFDTRIFQEKSVQAVVSEVFAGF 137

Query: 135 G-IEDYAFALKRECAQREFCVQYRETDLQFLHRIAAEEGLVYSHLHEAQKHTLLFTDSSD 193
           G +  Y F + +      +  QYRE+D  F+ R+   EGL Y   H A  H ++ TD S 
Sbjct: 138 GTLAKYEFRVSKPLKSHSYITQYRESDFNFVQRLLESEGLFYYFEHTADSHLMVITDDSS 197

Query: 194 SQPKLAKP--VPYNALAGGEINLPYVVDLQFKTTAQVSHTELKDYSFKKPAYGFTQRTQG 251
           +   L +   + Y++ +  E     +   Q     Q     ++ + +++P        Q 
Sbjct: 198 TLLPLPEQPQIRYHSASVTE-TADSITQWQSTRQLQSGQIAVRTFDYRQPRNFLPVTMQS 256

Query: 252 KDIAYQQPNYEHFDAPGRYKDDA--NGKAFSQIRLEYLRRDALLADAKSDEPLLLAGVRF 309
            +       +E +D PG+Y   +  +G+A  + R+E L         +S+   +  G  F
Sbjct: 257 LNQQGDVDRFEIYDFPGQYTHGSYEDGEAIVRNRIEALELMGKTFYGESNCRAMKPGYTF 316

Query: 310 DLQDHLDH----AMNRDWLVVQANHQGTQPQALQEEGGSGATTYSNQLKLIPAHITWRAR 365
           +L  H  H    A NR +L++   H+G+      ++ G     Y N+   +   I +R +
Sbjct: 317 ELTQHYLHDTGAAENRKFLLLSVEHRGSNNYMTGDQAG-----YVNRFVCVRKKIAYRPQ 371

Query: 366 -PCAKPQVDGPMIATVVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKSSCWVRVAQEWAG 424
               KP ++GP  A VVGP GEEI+ D  GRVK+ F WDR    N++SSCWVRVAQ  A 
Sbjct: 372 LNTRKPLINGPQTAIVVGPPGEEIFTDELGRVKLQFHWDRQGQFNDQSSCWVRVAQSGAS 431

Query: 425 SQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHATNTAPYALPDHKTKTVLRTETHQG 484
             +GS+ IPRVG EV+V FL+G+PD+P+I G  Y++TNT P++LP +KT++   T + +G
Sbjct: 432 GGFGSIQIPRVGDEVVVVFLDGNPDRPLIMGSLYNSTNTPPWSLPANKTQSGFLTRSMKG 491

Query: 485 QG--YNELSFEDQAGSEQILLHAQKDWDALIEHDHTEVIRHDQHLTVDNDRFTRIQRNQH 542
            G   N   FED+AG+EQI++HA+++ D  IE D T  + +++ +TV       ++++  
Sbjct: 492 DGGTANFFRFEDKAGAEQIIMHAERNMDTEIELDETHDVGNNRSITVGGTHTETVKKDTV 551

Query: 543 LTVEGEVRSKIALDSSHEVGASLQH---KVGQRIAVEAGKEISLKSGAKIVVEAGAELTL 599
           + V  E    + +D+     A+ QH   +VG        + I +K   K++V    + T 
Sbjct: 552 VQVT-EGSYTLQVDNQFIQVAAKQHIILQVGDSSITLTPEGIEIK--GKVIVTTSTDTTQ 608

Query: 600 KAGGS 604
             G +
Sbjct: 609 ITGAA 613