Pairwise Alignments

Query, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 722 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

 Score =  438 bits (1127), Expect = e-127
 Identities = 222/545 (40%), Positives = 322/545 (59%), Gaps = 24/545 (4%)

Query: 42  FRYQVDLASALSNLTAEQFVDQTAHLTILRDGQVVQQINGIVRQLSKGDTGHRHTFYSLT 101
           F  ++ L S  +++     +D+    TIL   + V+ ++G+V   S+G++G   T+Y   
Sbjct: 35  FELELKLISFENDIDFGHLLDKPVLFTILDGERPVRYVHGLVSSFSQGESGFYRTYYHAL 94

Query: 102 LVPALERLSLRSNSRIFQQQSVPEIISILLQEMGIEDYAFALKRECAQREFCVQYRETDL 161
           + P L R  LRSN RIFQ ++VP+I+ ++L+  GI+ Y      +   REFCVQ  ETDL
Sbjct: 95  VEPQLARARLRSNWRIFQHKTVPQILELMLKRQGIDQYELRASMDHQVREFCVQAGETDL 154

Query: 162 QFLHRIAAEEGLVYSHLHEAQKHTLLFTD----------------------SSDSQPKLA 199
            F+ R+AAEEG VY   H  + H L+ TD                        D +P   
Sbjct: 155 AFIARLAAEEGFVYRFAHSEKLHKLIITDRLQSLGLISHGAIKADHEDEGFGDDDEPVGP 214

Query: 200 KPVPYNALAGGEINLPYVVDLQFKTTAQVSHTELKDYSFKKPAYGFTQRTQGKDIAYQQP 259
             V Y A +GG+  +P +  L++    + +    +D++F  PAY    R  G  + +Q  
Sbjct: 215 DSVLYQANSGGDQAIPCLRRLRYSEQVRTARQVQRDHTFTHPAYRQEHRAAGPFLEHQSK 274

Query: 260 NYEHFDAPGRYKDDANGKAFSQIRLEYLRRDALLADAKSDEPLLLAGVRFDLQDHLDHAM 319
           +YE+FD PGRYK DA GK F++ R+  LR D  +A+ + D+  L  G+ F L DH    +
Sbjct: 275 DYEYFDYPGRYKRDAVGKPFTENRITALRHDVRIAEVQGDDVRLQPGLSFTLTDHPREDL 334

Query: 320 NRDWLVVQANHQGTQPQALQEE--GGSGATTYSNQLKLIPAHITWRARPCAKPQVDGPMI 377
           N  W V   +H+G+QP +LQEE  G    T Y  +  L+P    WR  P  KP+VDGP +
Sbjct: 335 NVHWRVSTVHHEGSQPTSLQEEAAGADQGTRYEQKAVLVPGRTEWRPAPLPKPRVDGPHM 394

Query: 378 ATVVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKSSCWVRVAQEWAGSQYGSMAIPRVGH 437
           ATVVGP GEEIYCD +GRVKV FPWDR S +NE SSCW+RV+Q WAG  +GSMAIPR+G 
Sbjct: 395 ATVVGPPGEEIYCDEWGRVKVSFPWDRESQNNEFSSCWLRVSQGWAGGSWGSMAIPRIGQ 454

Query: 438 EVIVSFLNGDPDQPIITGRTYHATNTAPYALPDHKTKTVLRTETHQGQGYNELSFEDQAG 497
           +VI+ ++NGDPDQP+ITGRTY      PY LP HKT+  ++++TH+G G+NEL FED+ G
Sbjct: 455 DVIIHYVNGDPDQPMITGRTYCGNQLPPYDLPRHKTRMTIKSQTHKGDGFNELRFEDELG 514

Query: 498 SEQILLHAQKDWDALIEHDHTEVIRHDQHLTVDNDRFTRIQRNQHLTVEGEVRSKIALDS 557
            E++ +HAQ+D + +++HD T  + +D+   VDND    I  ++  TV  + R  I  D+
Sbjct: 515 QEEVFIHAQRDQNNVVKHDETTQVGNDRKEQVDNDESILIGHDRTETVGNDERITIGQDA 574

Query: 558 SHEVG 562
           + ++G
Sbjct: 575 ALDIG 579