Pairwise Alignments

Query, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 729 a.a., VgrG protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  243 bits (621), Expect = 3e-68
 Identities = 174/632 (27%), Positives = 294/632 (46%), Gaps = 51/632 (8%)

Query: 17  SLVVRGFEGQESLSDSVWRCEPCYGFRYQVDL----------ASALSNLTAEQFVDQTAH 66
           +L+    +G E+LS+          F Y V L           S  +NL  +  V +   
Sbjct: 111 ALLFASLDGGETLSEL---------FSYVVQLKTPDTLNLGYVSPAANLPLKPMVGKDLC 161

Query: 67  LTILRDGQVVQQINGIVRQLSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQSVPEI 126
           + I  DG   + I+G+V          R   Y L + P ++ L+  S+ + FQ ++V +I
Sbjct: 162 VNIELDGGGKRHISGLVTAARVVGHEGRSVTYELRMEPWVKLLTHTSDYKAFQNKTVVDI 221

Query: 127 ISILLQEMGIEDYAFALKRECAQ----REFCVQYRETDLQFLHRIAAEEGLVYSHLHEAQ 182
           +  +L E     Y + +++   +    R + VQY ETD  FL R+  E G+ +   H   
Sbjct: 222 LDEVLAE-----YPYPVEKRLVESYPVRTWQVQYGETDFDFLQRLMQEWGIYWWFEHSED 276

Query: 183 KHTLLFTDSSDSQPKLAKPVPYNALA-----GGEINLPYVVDLQFKTTAQVSHTELKDYS 237
            HTL+  D+  +     K  P + L      G +++  ++  +    + +     L D+ 
Sbjct: 277 SHTLVLADAISAH----KACPDSPLVEWHQEGLKLDKEFIHTITANESLRTGQWVLDDFD 332

Query: 238 FKKPAYGFTQRTQGKDIAYQQPNYEHFDAPGRYKDDANGKAFSQIRLEYLRRDALLADAK 297
           F KP       T           YEH++ PG Y D + G+  ++IR+E  R         
Sbjct: 333 FTKPR-SLLANTVANPRETGHATYEHYEWPGDYFDKSEGEMLTRIRMEAQRSPGSRVLGG 391

Query: 298 SDEPLLLAGVRFDLQDHLDHAMNRDWLVVQANHQGTQPQALQEEGGSGATTYSNQLKLIP 357
            +   L+ G  F L+++    +N+++L++Q      Q  A Q  G     T+S + +L P
Sbjct: 392 GNIRTLMTGYTFTLENYPTAEVNQEYLLMQTL-LFVQDNA-QHSGQDQHFTFSTRFELHP 449

Query: 358 AHITWRA-RPCAKPQVDGPMIATVVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKSSCWV 416
               +R  R  +KP   GP  A V GP G+EI+ D +GRVKV F WDRY   +E SSCW+
Sbjct: 450 TREVFRPQRTVSKPHTKGPQSAIVTGPAGQEIWTDQYGRVKVQFGWDRYGKMDENSSCWI 509

Query: 417 RVAQEWAGSQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHATNTAPYALPDHKTKTV 476
           RV+  WAG  +G + IPR+G EV+V F NGDPD PII GRTY+     P+ LP   +++ 
Sbjct: 510 RVSYPWAGKGFGMIQIPRIGQEVLVDFKNGDPDLPIIVGRTYNQDTMPPWGLPGMASQSG 569

Query: 477 LRTETHQG--QGYNELSFEDQAGSEQILLHAQKDWDALIEHDHTEVIRHDQHLTVDNDRF 534
           + + +  G     N L F+D+ G+E++  HA+KD +  ++++ T  +  D+  T+  +  
Sbjct: 570 IFSHSLYGGPTNGNMLRFDDKTGAEEVKFHAEKDLNTTVKNNETHTVMVDRTKTIIKNET 629

Query: 535 TRIQRNQHLTVEGEVRSKIALDSSHEVGASLQHKVGQRIAVEAGKEISLKSGAKIVVEAG 594
             I  +++ TV       + L  +  +G + +  VG +  +  G        A +V+   
Sbjct: 630 NSIGEDRNTTVTKNDGLSVKLAQTINIGTTYRLDVGDQFTLRCG-------NAALVLHKD 682

Query: 595 AELTLKAGGSFVKVDAGGVHLVGPAINLNAGG 626
             +    G   +   +  + L+G  I++N  G
Sbjct: 683 GSIEF-CGKQLMLHTSDVMQLIGKGIDMNPDG 713