Pairwise Alignments

Query, 421 a.a., type VI secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., type VI secretion system protein VasL from Escherichia coli ECRC62

 Score = 60.8 bits (146), Expect = 8e-14
 Identities = 74/339 (21%), Positives = 127/339 (37%), Gaps = 43/339 (12%)

Query: 30  KVREEINRRFNPIAGGTDWAVVKEYCEQLACNQGMDFLICGYYAVACLKTQGLAGYATGM 89
           +++ E+++  +P     DW  V++    L    G++      Y +A  + QGLAG A G+
Sbjct: 25  ELQAEMSKLTHPARPDVDWRRVEKLSLALFRQNGVELQTQVCYVLAITRRQGLAGMADGL 84

Query: 90  ELMSASLANQGECDVKSAKVRKEILDWVNARVVQELKALKPTYESLRDLYRAERHCERLH 149
             +   L    +        R  +L WV  ++ Q L+ L   Y+ L  +YR  +H   + 
Sbjct: 85  GSLDILLQRWADFWPVQVHSRISLLSWVTEKMQQALRTLDIQYQDLPQIYRCVQHLSAIE 144

Query: 150 QLFEQQQTEYKVDFEGVGFALFEHIDRIE---------TQYHSLLKKQEKAQPPKLK--- 197
              +Q +  +    + +         R+E         T     L ++E  QP K +   
Sbjct: 145 TTLQQCELWHMTKLDVLAGQFRNTALRLERLAPQGAETTITPPELPRREMKQPEKSEESP 204

Query: 198 -------------------------FWQRGYALFTLGVLGVALGMVGGYWGWPWFYTTPY 232
                                      QR + +F  G++ +A     G WGW      P 
Sbjct: 205 QPVFATRPAQQNDKDASPSAPSPEISRQRTWPIFMAGMVVMACLGGTGLWGWSQL-NQPD 263

Query: 233 AAPQRI----TTLNEASQTQALLNDSSTSERARWQHDLIPLYRDTLQQNLTISFSEPKRH 288
           A  QRI      L ++ ++  L       +    Q   I   +  L+Q   +    P   
Sbjct: 264 ALIQRIQLSVMPLPQSLESGELAKLDVKDKALLAQDRTIAASQMQLEQLNKLPARWPLEQ 323

Query: 289 AITQLNLLRTLYPENEQVNALSQEFALQQQ-QALEQTAL 326
              QL  L  L+P+N QV AL+ ++  Q++  AL   AL
Sbjct: 324 GYRQLRQLDALWPDNPQVRALNAQWRKQRELSALSTEAL 362