Pairwise Alignments

Query, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

Subject, 1166 a.a., type VI secretion protein IcmF from Pseudomonas simiae WCS417

 Score =  402 bits (1034), Expect = e-116
 Identities = 327/1200 (27%), Positives = 535/1200 (44%), Gaps = 100/1200 (8%)

Query: 29   ILLNVAIWWAGPWLEVAGYKPLESIMARVVASSLFTLGCLAVWGIW-QWRKLQAFKSEQK 87
            I L++ IW+ GP L+V            +V         + V+ +W  +R  +  ++ ++
Sbjct: 19   IALSLIIWFVGPLLDV------------LVPEGRRWALIILVFAVWIAYRVFRIIQARRQ 66

Query: 88   REEQLRQ-------DPIKVYEQRQEVELNQVMLNMKQSLNK-------HNYLYALPWYLV 133
              E +R        DP  V    +   L Q M      L K          LY LPWY++
Sbjct: 67   AAEVMRSLAAETPADPNSVATAEELTTLRQRMDEALALLKKAKLGGDERRNLYELPWYVI 126

Query: 134  LGLENAGKTSLINRSGQNFVFSSVMRASGQKSEN-PYSFDWWIGDESVLIDPDGELLTQG 192
            +G   +GKT+ +  SG +F  ++ + A   +      + DWW  D++VL+D  G   TQ 
Sbjct: 127  IGPPGSGKTTALVNSGLHFPLAAQLGAGAVRGVGGTRNCDWWFTDQAVLLDTAGRYTTQD 186

Query: 193  NRSEENDGALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATATASERKAYANLLRA 252
            + S      +++  WL F+D L + RSRRP++G  +A+ ++ L   T +ER A+A  +R 
Sbjct: 187  SNS-----TVDKAAWLGFLDLLKKQRSRRPIDGAFIAISLSDLLLGTDAERAAHAAAIRL 241

Query: 253  RLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGFTFSMDSVDNLDSWL 312
            R++EL   L  R P+Y+ LTKLDL+ GF  FF + +K +R +V G TF++D   N DS L
Sbjct: 242  RIQELYTQLGVRFPIYLMLTKLDLVPGFMEFFDNLSKEERAQVWGMTFALDDGKNTDSPL 301

Query: 313  EEFASEYTQFVSRVNGMLPHAVAAPMTLEERNAIYSFTRQISGLKEILQQFFQEALASDQ 372
                SE+     R+N  L   +        R+ IY F +Q   LK+ LQ F +     + 
Sbjct: 302  AHLQSEFAGLEQRLNERLVERLQQERDPARRDLIYGFPQQFGALKDCLQSFLEGVFKPNA 361

Query: 373  FSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYGLSHAINTAQRAKNSTVYFTQKLFTHI 432
            F    L+RG YFTS  Q+G P +    A ++   L    + A+++     YF +KLFT +
Sbjct: 362  FEERVLLRGVYFTSGTQEGSPIDRLIGAMAQSMNLDRQ-HLARQSGTGRSYFIEKLFTAV 420

Query: 433  IYPEAGLASDNFRVAKNKRRLMGLSFVACSVA-TLLLAGTWHRNYLNNVQHADTVLTKVN 491
             + E GL   N +V + +R+ +    +A +VA  ++++  W  +Y  N  +   V  KV 
Sbjct: 421  AFAERGLVGVNPKV-ERRRKWIARGVLAATVALVVVVSSLWWVSYRANQAYIAQVDQKVA 479

Query: 492  QYKEQFPTSRSLA-SQREVLDPLNKIREATLEFGFFRDKPQYISDFGLYQGHTIGPKVEE 550
               +   T ++L+ +QR++L  L  +       G   D P +    GLYQG  +  +   
Sbjct: 480  PLGQ---TVQNLSPAQRDILAVLPLLNAVKNLAG---DSPSWSEGLGLYQGDMLEAESAS 533

Query: 551  TYLNLLETRFLPLLMADTIVALNQAETDEEKLAVLRVYRMLVDKSGRYQDYVMDYFAKYW 610
             Y  LL   F P L+      L+     +     L+ Y ML D      D++  + A  W
Sbjct: 534  VYRKLLIAVFAPRLVTRIEEQLHGGGNSDFLYEGLKAYLMLADSEHYDPDFIKAWIALDW 593

Query: 611  QKSF-----SGQRQIQEELLGHLDYAMRHTDLTAERLNGDKGAEQVMRPYDKVIARAQVE 665
             ++      + QRQ    L GHL         TA             R   ++I   + +
Sbjct: 594  DRNLPRDLPADQRQ---ALAGHLQSLFERHPPTA-------------RLDPRLIDDLRRQ 637

Query: 666  LGSMPNDQRVYRNLKLSAQTVLGPSVNLRSLIGPVFDVVFEERVLNSSSLFIPQMLTKRG 725
            L  +P  QRVY  +K        P   L    G    +VF  +        +    T +G
Sbjct: 638  LQQLPVAQRVYDRVKRQKLPEGIPDFRLNEAAGRDAALVFSRKSGKPLGEPLSGFFTAKG 697

Query: 726  FDDYFMPQSESVSELALIDSWVLGQSKTAQFSEADKQALREKIRDLYVADYTNTWRAALN 785
            +   F+  S + +     + WVLG     Q  + +  +L   +R LY  DY   W A L 
Sbjct: 698  YRQAFLLSSLNQTGTLAEEQWVLGHE---QADQQNVVSLAADVRRLYFQDYQRQWDALLA 754

Query: 786  EIDVKYFNDINDAVMVLENITSNLEPMQRLLRTLDDNTQLYS--------ALPKDESA-- 835
            +ID      +  A  VL  I+    P+++LL  +   T L +         +P +     
Sbjct: 755  DIDFVPITSVAQAADVLRVISGPTSPLKKLLVAVAKETDLQAEERQLAAKGVPVEGGVDK 814

Query: 836  LKELLKS------PKYKVASMIETP----FADLNGMLKPVGSKPAYMTEVLASVDELKSY 885
            LKE L S      P     +  + P    FA+LN ++     +PA +  +L  ++ L   
Sbjct: 815  LKERLGSLLGQEQPAANAPAAADDPVTAHFAELNSIVSKNEGEPAAIDGLLTDMNAL--- 871

Query: 886  LKSIQDAPDVGMAALDATKARVKLVNADPIYTLKRISSGLPKPLDSMMAKLADESWYVVK 945
               +Q +  VG A+ DA     K   A     +   +   P  +  M+  + + +   + 
Sbjct: 872  --YVQVSAMVG-ASGDALLGEAKNQAAAAATRVSLNAERQPPLVQGMVKSVVNSTTNSMM 928

Query: 946  QEAIKHLEVRWTEDVYKTFQSKLAGRYPFNPASNKDVALADFEAFFAPNGTLDNFYNQQL 1005
                  L   W  +V   ++  LAGRYP +P S +D  L DF  FF   G +DN++ + L
Sbjct: 929  GGVRNQLNAAWVSEVVNVYRQSLAGRYPMSPGSARDATLDDFGQFFGVGGVMDNYFRKYL 988

Query: 1006 KMFIDENISV--ASDDSAQSI-IRKEVLDQIKQAQKIREAFFNRKGILD-VSFSVEPLSL 1061
            + ++D +         +AQ + I   VL   ++A  IR+AFF   G    V F ++P+S+
Sbjct: 989  QPYVDTSAQTWRWQPGAAQKLGIAPGVLQTFQRAATIRDAFFRAGGTQPIVRFELKPVSM 1048

Query: 1062 SNNKRRSVLNVDGQFLAYSHGPRENVELIWPNTLRDSAVSKVTLIPTQTNMSPRSLQIQG 1121
                 + +L++DGQ L+Y HGP   V + WPN      V +++++P   +     + + G
Sbjct: 1049 DPTITQFLLDLDGQQLSYDHGPSRPVAMQWPNP-GSIGVVRISIMPPSAS-GRSGVTLDG 1106

Query: 1122 PWAFFRLLDQGDVVSA-SQTSVDFKFIVDGGEMIYRINAEADANPFTERLFKSFKLSKTL 1180
            PWA+FRLL+Q D+ +  S    + +  VDG  + Y + A +  NPF  R+   F L + L
Sbjct: 1107 PWAWFRLLEQSDLTAGNSPDRFNLRLRVDGASIAYELRANSAFNPFKSRVLSGFSLPERL 1166