Pairwise Alignments

Query, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

Subject, 1111 a.a., type VI secretion protein VasK from Pseudomonas simiae WCS417

 Score =  293 bits (749), Expect = 7e-83
 Identities = 294/1206 (24%), Positives = 503/1206 (41%), Gaps = 127/1206 (10%)

Query: 4    FIVGIVRRLKPTVVAALPILLFTTFILLNVAIWWAGPWLEVAGYKPLESIMARVVA-SSL 62
            F  G+   L+ + V +L ++L    +     +W+ GP L V  Y+  +S  +R++  S L
Sbjct: 4    FFKGVGTVLRKSWVYSLLLVLSCALL-----VWFFGPLLAVDDYRFWQSPTSRLLTISGL 58

Query: 63   FTLGCLAVWGIWQWRKLQAFKSEQKREEQLR---QDPIKVYEQRQEVELNQVMLNMKQSL 119
              L  LA+ G+   R  +  + E+    Q R    + I+    R +  L  +  + +   
Sbjct: 59   LLLWGLAMVGMGARRTARLNQPEEHERHQRRALINEEIRQVRARFKEALQALKTSRRYGE 118

Query: 120  NKHNYLYALPWYLVLGLENAGKTSLINRSGQNFVFSSVMRAS-GQKSENPYSFDWWIGDE 178
                +   LPWYL++G + +GKTSL+  SG    F     A  G  S      DW+  ++
Sbjct: 119  RSERWRDELPWYLLIGEQGSGKTSLLAASGLPSPFDHPDAAPLGAASW----CDWYFAED 174

Query: 179  SVLIDPDGELLTQGNRSEENDGALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATA 238
            +VL++  G  L Q + S +  G      W   +D L   R  RPLNG+V+ L    L+++
Sbjct: 175  AVLVEAAGRYLGQPDPSVDAAG------WSTLLDLLKWRRRSRPLNGVVVTLSADTLSSS 228

Query: 239  TASERKAYANLLRARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGF 298
               + + +A  +R RL+++ +TL   +PVY+ LT+ D L GF  FF        E+VLG 
Sbjct: 229  NEHDLERHARHVRTRLQDIQQTLHVDVPVYLVLTQSDRLAGFAEFFDAQQGDGTEQVLGG 288

Query: 299  TFSMDSVDNLDSWLEEFASEYTQFVSRVNGMLPHAVAAPMTLEERNAIYSFTRQISGLKE 358
                D        L +    +   + R+ G L   +     +E R  +  F RQ++ + +
Sbjct: 289  DLGTD--------LAQVRDVFENLLQRLGGDLIPRLHQERNVERRGHMLDFPRQVARIGD 340

Query: 359  ILQQFFQEALASDQFSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYGLSHAINTAQRAK 418
             L  F + A + ++      +RG Y T                              +  
Sbjct: 341  ALCLFIEAAFSVNRNQPINALRGFYLTCA----------------------------KTV 372

Query: 419  NSTVYFTQKLFTHIIYPEAGLASDNFRVAKNKRRLMGLSFVACSVATLLLAGTWHRNYLN 478
            +   +F Q LF  +I+ EA  A       +   R  G   +A +V    +   W  +Y  
Sbjct: 373  DVRPHFVQGLFKRVIFAEADQAGLLTPERQRIHRRHGWMALAATVVIGTVGAVWAHSYSF 432

Query: 479  NVQHADTVLTKVNQYKEQFPTSRSLASQREVLDPLNKIREATLEFGFFRDKPQYISDFGL 538
            N Q    +L        Q  T         +L  L+    AT  F   + + ++I   GL
Sbjct: 433  NHQR---LLQLTGLIHTQTGTPPGADESHALLTLLDSRLAATQVFSP-QAQARWIDRAGL 488

Query: 539  YQGHTIGPKVEETYLNLLETRFLPLLMADTIVALNQAETDEEKLAV-LRVYRMLVDKSGR 597
            YQG      +   Y + L+ RFLP +       +  +  D E+L   LR Y ML  +  R
Sbjct: 489  YQGALSIAPLAAAYEHTLQQRFLPYVATVLEGRVRGSLGDREQLLDNLRAYLMLNLRERR 548

Query: 598  YQDYVMDYFAKYWQKSFSGQRQIQEELLGHLDYAMRHTDLTAERLNGDKGAEQVMRPYDK 657
               ++ +Y +  W    S  +++ E     L+                   +  + P D+
Sbjct: 549  DNAWLAEYVSGQWSGDSSANKRLNEHFARLLE-------------------QPFLAPLDE 589

Query: 658  -VIARAQVELGSMPNDQRVYRNLKLSAQTVLGPSVNLRSLIGPVFDVVFEERVLNSSSLF 716
             ++ARA++ L      + VYR L+  A+ V    +      GP F  V            
Sbjct: 590  ALVARARLVLRGESLAEVVYRALREQARNVEPYPL----AEGPAFSRVEPP--------- 636

Query: 717  IPQMLTKRGFDDYFMPQSESVSELALIDSWVLGQSKTAQFSEADKQALREKIRDLYVADY 776
            IP   T++    +    ++ V  +A  D+WVLG+        AD + L   +   Y ++Y
Sbjct: 637  IPGFYTRKYLQLFEQQGTQMVHAIAQ-DNWVLGEG--GDLGAADLRRLMLVLEQRYFSEY 693

Query: 777  TNTWRAALNEIDVKYFNDINDAVMVLENITSNLEPMQRLLRTLDDNTQLYSALPKDESAL 836
             + W  AL  I ++    +      L ++TS    + +LL+ + +NT+L S   + E+A+
Sbjct: 694  ADVWSDALGRIRLRESGSLQQGAEYLASLTSAQSALVQLLQQVRENTRLVSVSDRLETAV 753

Query: 837  KELLKSPKYKVASM------------IETPFADLNGMLKPVGSKPAYMTEVLASVDELKS 884
            + +         S+            ++  F  L+ +L    +    +T+ L  +DEL+ 
Sbjct: 754  QPVAGLGAVTSRSLARAGLPDNARRALQRRFEPLHQLLDEQQNPGGELTQALRLLDELQL 813

Query: 885  YLKSIQDAPDVGMAALDATKARVKLVNADPIY-TLKRISSGLPKPLDSMMAKLADESWYV 943
             L ++        AA     AR ++    P+   L+  ++  P+PL      +AD+SW  
Sbjct: 814  QLSAVSRDSSPEQAAFKM--ARQRMDGQQPLLGNLRDTAARFPQPLKGWFEGIADQSWRQ 871

Query: 944  VKQEAIKHLEVRWTEDVYKTFQSKLAGRYPFNPASNKDVALADFEAFFAPNGTLDNFYNQ 1003
            +  +A   +   +  +VY  +   +  RYPF+  +  DVAL DF+AFF P G +  FY  
Sbjct: 872  LLDDAYGFVNQHYQNEVYGFYAKAIQRRYPFDAHAGSDVALGDFQAFFKPRGAMARFYES 931

Query: 1004 QLKMFI---DENISVASDDSAQSIIRKEVLDQIKQAQKIREAFFNR-KGILDVSFSVEPL 1059
             L+ F+        +   +     + + +L+Q+ +AQ IR+ FF   +G L V F++ P 
Sbjct: 932  YLRPFVIVEGNRYRLRGIEGRSLPMSRSLLEQLTRAQIIRQGFFTEDQGELAVRFTLAPY 991

Query: 1060 SLSNNKRRSVLNVDGQFLAYSHGPRENVELIWPNTLRDSAVSKVTLIPTQTNMSPRSLQI 1119
            SL     R+ L V  Q L Y HGP   V   WPN   +   S V         + R L I
Sbjct: 992  SLDQAVSRATLRVGDQQLEYRHGPIVPVAFHWPNEAENGRSSLVL-----ERGAERPLGI 1046

Query: 1120 Q---GPWAFFRLLD--QGDVVSASQTSVDFKFIVDGGEMIYRINAEADANPFTERLFKSF 1174
            +   G W+ FR  D  Q +  S     V  K  + G    Y + ++ D++PF    +++F
Sbjct: 1047 EKDSGAWSLFRFFDLMQSEPASGRDAQV-LKADLAGLRANYLLTSQRDSSPFQMATWRTF 1105

Query: 1175 KLSKTL 1180
            +L + L
Sbjct: 1106 RLPEQL 1111