Pairwise Alignments

Query, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

Subject, 1219 a.a., T6SS component TssM (IcmF/VasK) from Variovorax sp. SCN45

 Score =  338 bits (868), Expect = 1e-96
 Identities = 314/1231 (25%), Positives = 531/1231 (43%), Gaps = 113/1231 (9%)

Query: 24   LFTTFILLNVAIWWAGPWLEVAGYKPLESIMARVVASSLFTLGCLA--VWGIWQWRKLQA 81
            +F   + L   IW  GP + V  Y+PLE  + R+   +L     LA  V+  W+ R+L A
Sbjct: 16   VFLGLVALAFLIWIIGPAIAVGRYRPLEDEIVRIAVIALMFAIWLARLVYRKWRERRLNA 75

Query: 82   -----FKSEQKREEQLRQDPIKVYEQRQE--VELNQVMLNMKQ------------SLNKH 122
                  ++  K+E++ + +     ++ Q    +   ++ NM+             S+   
Sbjct: 76   QLLNQLRTPSKKEKEAKPEDAPEIKELQSGFTDATAILKNMRFGQGADGKPASRFSVFDR 135

Query: 123  NYLYALPWYLVLGLENAGKTSLINRSGQNFVFSSVM-RASGQKSENPYSFDWWIGDESVL 181
             YLY LPWY+ +G   +GKT+ +  S  +F  +  + +A+ +      + DWW  +E+VL
Sbjct: 136  QYLYQLPWYIFIGAPGSGKTTALVNSDLDFPLADQLGKAAVRGIGGTRNCDWWFTNEAVL 195

Query: 182  IDPDGELLTQGNRSEENDGALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATATAS 241
            ID  G   T  +  E ++G      W  F++ L + R R+P+NG +L + +A L  A  +
Sbjct: 196  IDTAGRYTTHESNRETDEGE-----WKGFLELLKKFRPRQPINGAILTISIADLPLADDA 250

Query: 242  ERKAYANLLRARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGFTFS 301
            +R  +A  LR RL EL   L    PVY+ +TK DLL GF  +F    +++R++V GFTF 
Sbjct: 251  QRARHAMALRKRLLELRNDLGIDFPVYVLVTKTDLLAGFNEYFGSLGRAERQQVWGFTFP 310

Query: 302  MD-SVDNL----------DSWLEEFASEYTQFVSRVNGMLPHAVAAPMTLEERNAIYSFT 350
            ++ +  N               E F  EY     R++  LP  +AA      R   Y   
Sbjct: 311  IEGNAANKAAKGAAPLKGGDLRERFHQEYRLLHQRLDERLPELLAAEPDPMRRAQAYLLP 370

Query: 351  RQISGLKEILQQFFQEALASDQFSTSALVRGAYFTSVYQQGVPTNAFDD--AASRRYGLS 408
            +Q +  ++IL  F  +     +F  ++++RG YFTS  Q+G    AFD    A +RY L 
Sbjct: 371  QQFASFEDILGTFLADVFNPSKFEAASMLRGVYFTSGTQEG---TAFDRVMGAIKRY-LQ 426

Query: 409  HAINTAQRAKNSTVYFTQKLFTHIIYPEAGLASDNFRVAKNKRRLMGLSFVACSVATLLL 468
                 A        YF ++L   +I+ +AG+A  N R  + KR +    +    V  +L 
Sbjct: 427  VNAPPAPPPGPGKSYFLKELLQQVIFRDAGVAGTNLRWYRRKRAIDIAGYSVIGVLLVLF 486

Query: 469  AGTWHRNYLNNVQHADTVLTKVNQYKEQFPTSRSLASQREVLDPLNKIREATLEFGFFRD 528
             G    ++ NN  +    + +V+   + F  + +      V+D    I  + L     RD
Sbjct: 487  LGACVNSWRNNKDY----VAEVDGNAKAFNKAAARGELPTVVDSGGDIASSLLILDRLRD 542

Query: 529  KPQY----ISD------FGLYQGHTIGPKVEETYLNLLETRFLPLLMADTIVALNQAETD 578
             P+     +SD      FGLYQG  +    +  Y   LET  LP        +L +A  +
Sbjct: 543  LPKSSHFDVSDPPLSYRFGLYQGEKLQAATDGVYQRALETVLLPQAAQRVEQSLREASKN 602

Query: 579  EEKLA--VLRVYRMLVDKSGRYQDYVMDYFAKYWQKSFSGQ--RQIQEELLGHLDYAMRH 634
            + + +   L+ Y ML D      D++  +      +       R+ +  L  HL      
Sbjct: 603  DAEYSYEALKAYLMLFDAERYDADFLQAWLLSDVDRKIGASLTREQRTNLESHLKALFAG 662

Query: 635  TDLTAERLNGDKGAEQVMRPYDKVIARAQVELGSMPNDQRVYRNL-KLSAQTVLGPSVNL 693
              LT+                +++I + +  L  +P  QR Y  L ++  QT    + ++
Sbjct: 663  RVLTSP-----------FAKDERLITQTRERLAGVPLAQRSYARLRRILLQTSPPNAFSI 711

Query: 694  RSLIGPVFDVVFEERVLNSSSLFIPQMLTKRGFDDYF-MPQSESVSELALIDSWVLGQSK 752
                G    +V         +  IP + T RG+ D F    +E+   L   D WVL    
Sbjct: 712  AEAGGAESALVIRRASGKPLTDGIPTLFTYRGYWDIFDKRMAETTLSLEQEDRWVLQIRA 771

Query: 753  TAQFSEADKQALREKIRDLYVADYTNTWRAALNEIDVKYFNDINDAVMVLENITSNLEPM 812
                    ++ L  ++R LY+ DY   W   L +I +     +  ++ +   ++++  PM
Sbjct: 772  PGIADITSRELLLREVRRLYLTDYIRVWDEYLTDIRLADSRSLLQSIQMTRVLSTSESPM 831

Query: 813  QRLLRTLDDNTQLYSALPKDESALKELLKSPKYKVASMIETPFADLNGMLKPVGSKPAYM 872
             R++R     T L   L   + A + LL   + +VAS  E     L G       + A +
Sbjct: 832  SRIIRGAARETDL---LRNHDEAARGLLDQAQNRVASTRER-IEQLIGQPDGSQRRNARV 887

Query: 873  TEVLASVDELKSYLKSIQDAP-DVGMAALDATKARVKLV------------------NAD 913
                + VD     L+ +  AP   G A +DAT A +  +                  ++D
Sbjct: 888  DRPESLVDNHFEPLRRMVTAPKQGGQAPIDATAALINELYTFLTATDTALRSGNIPPSSD 947

Query: 914  PIYTLKRISSGLPKPLDSMMAKLADESWYVVKQEAIKHLEVRWTEDVYKTFQSKLAGRYP 973
             +  ++  +  LP P   M+  L+  +         +++       +       +AGRYP
Sbjct: 948  AVTKVQAEAGRLPVPFQGMLNDLSATASSKAAAVTRQNIGQSAAASIGSFCNQAIAGRYP 1007

Query: 974  FNPASNKDVALADFEAFFAPNGTLDNFYNQQLKMFIDENISV-----ASDDSAQSIIRKE 1028
            F+  SN+DVA  DF   FAP G +D+F+ + L   +D +++        D SA    R  
Sbjct: 1008 FSRGSNRDVASGDFAQLFAPGGMMDDFFQKNLITQVDTSVNPWAFKRGVDGSAAG--RSA 1065

Query: 1029 VLDQIKQAQKIREAFFN-RKGILDVSFS--VEPLSLSNNKRRSVLNVDGQFLAYSHGPRE 1085
             LD  ++AQ IR+ FF+   G    SF+  + P  +     +  L++DGQ + Y+HGP+ 
Sbjct: 1066 YLDSFQKAQAIRDVFFSGMAGGRTPSFTLDIRPEDMDAALTQFTLDIDGQTVRYAHGPQA 1125

Query: 1086 NVELIWPNTLRDSAVSKVTLIPTQTNMSPR-SLQIQGPWAFFRLLDQGDVVS-ASQTSVD 1143
               + WP   R+S  ++V L  T  N +P   +  +GPWA  RL D+  + S +S  S +
Sbjct: 1126 PSTVKWPGP-RNS--NQVRLQVTTANGTPAGGIVTEGPWALHRLFDKASISSGSSPESFN 1182

Query: 1144 FKFIVDGGEMIYRINAEADANPFTERLFKSF 1174
              F + G +++  + A +  NP       SF
Sbjct: 1183 ATFDLQGKKVVLAVTANSVYNPLRLPQMNSF 1213