Pairwise Alignments

Query, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

Subject, 1200 a.a., T6SS component TssM (IcmF/VasK) from Variovorax sp. SCN45

 Score =  350 bits (897), Expect = e-100
 Identities = 305/1226 (24%), Positives = 525/1226 (42%), Gaps = 106/1226 (8%)

Query: 23   LLFTTFILLNVA--IWWAGPWLEVAGYKPLESIMARVVASSLFTLGCL--AVWGIWQWRK 78
            LL T   L+ VA  +WW GP +++    PLES + R +   +  L  L  A++  W+ R+
Sbjct: 13   LLLTLLALIVVALLVWWIGPLVKIGALAPLESELTRAIVIGVIVLAVLLRALYRRWRARR 72

Query: 79   LQAFKSE--QKREEQLRQDPIKVYEQRQEVELNQVMLNMKQ----------------SLN 120
                 ++   K        P+   ++  +   ++ +  +KQ                S++
Sbjct: 73   ASRHLTDGLMKAPAARADAPVDGEQKILDTRFSEAVATLKQMRLHAAGKKPGWRDWLSIS 132

Query: 121  KHNYLYALPWYLVLGLENAGKTSLINRSGQNFVFSSVMRASGQKSEN-PYSFDWWIGDES 179
              +YLY LPWY+ +G   AGKT+ +  SG +F  +        +      + DWW  DE+
Sbjct: 133  GGSYLYDLPWYVFIGAPGAGKTTALVNSGLSFPLAEKFGPGAIRGVGGTRNCDWWFTDEA 192

Query: 180  VLIDPDGELLTQGNRSEENDGALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATAT 239
            VLID  G   TQ +   E+  A     W  F+  L + R RRPLNG+ L + VA L +  
Sbjct: 193  VLIDTAGRYTTQDSHQSEDKSA-----WEGFLGLLKKARPRRPLNGVFLTVSVADLLSQG 247

Query: 240  ASERKAYANLLRARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGFT 299
               R   A  +RARL EL   L+TRLPVY+ +TK DLL+GF  +F    K QR +V GFT
Sbjct: 248  PEARSQLAASIRARLLELDSKLTTRLPVYVLVTKSDLLYGFTDYFDDLGKEQRAQVFGFT 307

Query: 300  FSMDSVDNLDSWLEE------FASEYTQFVSRVNGMLPHAVAAPMTLEERNAIYSFTRQI 353
              + + +NL   +EE      F  E+    +RVN  L   +        R AI+ F  Q 
Sbjct: 308  --LPAEENLQ--VEEKGLSTAFNREFALLHNRVNDGLIARMQRETDGTRRAAIFGFPAQF 363

Query: 354  SGLKEILQQFFQEALASDQFSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYGLSHAINT 413
              +  +L    ++     +F+    VRG YFTS  Q+G P +    + +R +G+  A+  
Sbjct: 364  GSIGSLLSDLLEQVFTGSRFAQPPWVRGVYFTSGTQEGSPIDRVMGSLARSFGIERAMLA 423

Query: 414  AQRAKNSTVYFTQKLFTHIIYPEAGLASDNFRVAKNKRRLMGLSFVACSVATLLLAGTWH 473
             Q++   + YF   L   +++PE  LA  + ++ + +  L  +   A ++ T+ L   W 
Sbjct: 424  PQKSSGRS-YFLTSLLREVVFPEQRLAGADVKLERRRHTLRVIGVTAMTLVTVGLLAAWG 482

Query: 474  RNYLNNVQHADTVLTKVNQYKEQFPT----SRSLASQREVLDPLNKIREATLEFGFFRDK 529
             + L N+ +  +V  +V   ++         ++L     VL  L  I +         D+
Sbjct: 483  YSTLQNMNYLKSVEARVEPARQNLAALPARVQNLVEVAPVLQGLRDIWKTPENRA--GDE 540

Query: 530  PQYISDFGLYQGHTIGPKVEETYLNLLETRFLPLLMADTIVALNQAETD--EEKLAVLRV 587
            P  ++  GLYQG  +      T+   L   FLP +       L  A+ D  E     L+ 
Sbjct: 541  PLSMT-LGLYQGDKLDAAAMLTHQRALNDAFLPQIAKRIEDQLRTAQKDNLEYTYEALKS 599

Query: 588  YRMLVDKSGRYQDYVMDYFAKYWQKSFSGQRQIQEELLGHLDYAMRHTDLTAERLNGDKG 647
            Y ML        + +  +    W ++    R I E+    L+  +       + L     
Sbjct: 600  YLMLYQPEHFDAEALKAWITLDWSRNL--DRGIPEDQRKQLEDQL-------DVLIAQGP 650

Query: 648  AEQVMRPYDKVIARAQVELGSMPNDQRVYRNLKLSAQTVLGPSVNLRSLIGPVFDVVFEE 707
                ++  + ++   +  L S P +QRV+  LK    T   P+ ++ +  GP   +VFE 
Sbjct: 651  PRSPLKMDENLVRSVRAVLASYPLEQRVFSRLKRQRATKDIPAFSVAAATGPSGPLVFER 710

Query: 708  RVLNSSSLFIPQMLTKRGFDDYFMPQSESVSE-LALIDSWVLGQSKTAQFSEADKQ---A 763
                  +  +P M T  G+   F  +   ++  LA  D WVLGQ +       D     A
Sbjct: 711  ISGKPLTEGVPGMFTYDGYHKRFQNEVTVLTGLLANEDPWVLGQDRNTADRLRDVAALGA 770

Query: 764  LREKIRDLYVADYTNTWRAALNEIDVKYFNDINDAVMVLENITSNLEPMQRLLRTLDDNT 823
            L +++R LY+ +Y   W A L+++ +   N ++  +     ++    P+   LR +   T
Sbjct: 771  LTDRVRRLYLEEYVKQWEALLSDVRLIRANGLDKNIETARILSGVGSPLSNFLRAVVKET 830

Query: 824  QLYSALPKDESALKELLKSPK------------------------YKVASMIETPFADLN 859
             L   +P+ ++    + K+ +                         ++ S+++  F  L 
Sbjct: 831  TL---IPQGDAGKDVVSKATETVRNTRKGLEDLFGGDPGRQVPAGKRIESIVDDRFEPLR 887

Query: 860  GMLKPVG-SKPAYMTEVLASVDELKSYLKSIQDAPDVGMAALDATKARVKLVNADPIYTL 918
             ++   G ++PA + + L   +E+  YL ++            A K R      D    L
Sbjct: 888  RLVTAGGPNQPAPIDDALKLFNEVYVYLTAVD----------TAVKGRTSPPPGDVAGKL 937

Query: 919  KRISSGLPKPLDSMMAKLADESWYVVKQEAIKHLEVRWTEDVYKTFQSKLAGRYPFNPAS 978
            K  +  LP+P+ SM+  L+ +S     Q A +    +    V +     +AGRYPF   S
Sbjct: 938  KSDAGRLPEPVRSMVENLS-QSGAAQAQTAERGNLSQDLRPVAEFCARAIAGRYPFVGNS 996

Query: 979  NKDVALADFEAFFAPNGTLDNFYNQQLKMFIDENISV--ASDDSAQSIIRKEVLDQIKQA 1036
             +DV   DF   F P G +D+F+ ++L   +D +         + +  I  + L Q ++A
Sbjct: 997  KRDVLPEDFGQMFGPGGLMDDFFQKRLAALVDTSTRPWRYKPVAERGAITTQALAQFERA 1056

Query: 1037 QKIREAFFNRKGI-LDVSFSVEPLSLSNNKRRSVLNVDGQFLAYSHGPRENVELIWPNTL 1095
             +I++ FF   G    +    +P+ +     + +L+VDGQ + Y+HGP   + + WP   
Sbjct: 1057 ARIKDIFFRGGGRGPSMRLDFKPVEMDAGITQFILDVDGQLVKYAHGPVVPMAVQWPGPK 1116

Query: 1096 RDSAVSKVTLIPTQTNMSPRSLQIQGPWAFFRLLDQGDVVSASQTSVDF-KFIVDGGEMI 1154
              + V      P+ T  S  +  + GPWA FR LD G + +       F  F +   +  
Sbjct: 1117 GSNQVRIQVSPPSTTGSSGEA--VDGPWALFRALDDGQLEAGDAPEKFFITFQIGARKTR 1174

Query: 1155 YRINAEADANPFTERLFKSFKLSKTL 1180
            + +   +  +P   R  + F   + L
Sbjct: 1175 FEVTTNSVQHPIRLRELREFSCPEGL 1200