Pairwise Alignments

Query, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

Subject, 1208 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

 Score =  820 bits (2117), Expect = 0.0
 Identities = 455/1203 (37%), Positives = 698/1203 (58%), Gaps = 39/1203 (3%)

Query: 1    MWKFIVGIVRRLKPTVVAALPILLFTTFILLNVAIWWAGPWLEVAGYKPLESIMARVVAS 60
            +WK++      L   +  A+P+LL    +L+ VAIWW GP       +PL S+  R +AS
Sbjct: 4    LWKYLKRWGWPLMTRIGLAMPLLLGLGAVLMLVAIWWLGPQWTWRDQQPLASVAHRSMAS 63

Query: 61   SLFTLGCLAVWGIWQWRKLQAFKSEQKREEQLRQDPIKVYEQRQEVELNQVMLNMKQSLN 120
             +F L  L  W +    + +  ++E+++      DP + +   QE  L+Q +     +  
Sbjct: 64   LVFVLVALLSWLVVLRTRFRRLQAERQQAMAAEVDPTQPFVHAQEKALSQGLARYLDNAG 123

Query: 121  KHNYLYALPWYLVLGLENAGKTSLINRSGQNFVFSSVMRASGQ---KSENPYSFDWWIGD 177
                LY LPWYLVLG   AGK+S I+ + Q+F  + + +A  +        Y   WWI +
Sbjct: 124  GRRALYRLPWYLVLGARQAGKSSFIDCTDQSFSLTRIDKAQARGRPAQALAYPVGWWISN 183

Query: 178  ESVLIDPDGELLTQ-------GNRSEENDGAL----ERRLWLHFVDWLDRTRSRRPLNGI 226
            ++V+IDP G  ++Q       G+ S + + ++    + +LW H +DWL R RS+R LNG+
Sbjct: 184  DAVIIDPPGAFISQNGPADSLGSDSTDVESSVPSGTQAKLWQHLLDWLQRNRSQRALNGL 243

Query: 227  VLALDVAHLATATASERKAYANLLRARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKH 286
            VL +D+  L   T  +R A A+LLR RL E+   L +RLP+Y+ L+K DLL GF+ F+  
Sbjct: 244  VLVVDLPALLHGTVEQRTALAHLLRTRLYEVSSQLGSRLPLYVVLSKFDLLDGFDQFYSK 303

Query: 287  YTKSQREEVLGFTFSMDSVDNLDSWLEEFASEYTQFVSRVNGMLPHAVAAPMTLEERNAI 346
             + ++R  + GFTF +D+VD  D+WL E+   Y + + ++   +   +    +   R+ +
Sbjct: 304  LSAAKRNSLFGFTFKLDAVDTFDAWLGEYGEHYDRLLEQLFEQVIDRLDVQGSPALRSRL 363

Query: 347  YSFTRQISGLKEILQQFFQEALASDQFSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYG 406
            YS  RQ+ GL+ +L  F +E LASD+F+T ALVRG Y++SV Q G   NAF   A++ Y 
Sbjct: 364  YSLHRQLLGLRPMLLSFLRETLASDRFTTPALVRGVYWSSVVQHGDVRNAFVREAAQPYK 423

Query: 407  LSHAINTAQRAKNSTVYFTQKLFTHIIYPEAGLASDNFRVAKNKRRLMGLSFVACSVATL 466
             S  +   +    +  YF Q+ F  +IY EAGLA DN RVA+ KR+L+ +      +A  
Sbjct: 424  TSLPLLEGKPQAKALAYFIQQAFGRVIYKEAGLAGDNVRVARRKRQLLWVGSSVGVLAFC 483

Query: 467  LLAGTWHRNYLNNVQHADTVLTKVNQYKEQFPTSRSLASQREVLDPLNKIREATLEFGFF 526
            +   +WHR +  N   A +VL K  +Y       R   + R +L+PL++IR+A   FG +
Sbjct: 484  VAIASWHRYFDINGVKAASVLAKSREYSHHEVDQRLDPTGRNLLEPLDQIRDAVAVFGDY 543

Query: 527  RDKPQYISDFGLYQGHTIGPKVEETYLNLLETRFLPLLMADTIVALNQAET-DEEKLAVL 585
            R     ++D GLYQG TIGP V+E YL+LL  RFLP L +  I A++ A    E+++A L
Sbjct: 544  RAAWPGVADLGLYQGRTIGPTVDEAYLSLLSRRFLPALASGVIEAMDAAPPGSEQQMAAL 603

Query: 586  RVYRMLVDKSGRYQDYVMDYFAKYWQKSFSGQRQIQEELLGHLDYAMRHTDLTAERLNGD 645
            RVYRML D+  R  ++V D+ A+ WQ++F GQ Q+Q +L+ HL YA+ + D         
Sbjct: 604  RVYRMLEDRRNRRAEWVEDWMARQWQQAFPGQGQLQRDLMRHLKYALTYADTD------- 656

Query: 646  KGAEQVMRPYDKVIARAQVELGSMPNDQRVYRNLKLSAQTVLGPSVNLRSLIGPVFDVVF 705
                  +  Y + ++  Q  L  +P  QRVY  LK  AQ  L   ++LR  +GP FDVV+
Sbjct: 657  ------LPQYRQRVSHVQQTLRKVPLPQRVYAGLKQQAQEQLHTGLDLRHQVGPAFDVVY 710

Query: 706  EERVLNS---SSLFIPQMLTKRGFDDYFMPQSESVSELALIDSWVLGQSKTAQFSEADKQ 762
            +    +S   + + +  MLT +GF +YF P+S+  +E+A+ID W LG+     +S+AD+ 
Sbjct: 711  QLSSGSSQGDNGVLLAPMLTAKGFKEYFEPRSQRFTEMAMIDQWALGERAQLDYSDADQA 770

Query: 763  ALREKIRDLYVADYTNTWRAALNEIDVKYFNDINDAVMVLENITSNLEPMQRLLRTLDDN 822
            AL E++R+LY ADY ++WR ALN   V  F D++  V +LE +     P+ RLL T+ DN
Sbjct: 771  ALNERLRNLYSADYIDSWRRALNAFSVADFRDLDHGVTILEQLAGPAAPLHRLLETVRDN 830

Query: 823  TQLYSAL---PKDESALKELLKS-PKYKVASMIETPFADLNGMLKPVGSKPAYMTEVLAS 878
            + L S +     DE+     + S P+ + A +I+  FA L+ ML   G KP+Y  E  A+
Sbjct: 831  SSLLSPVNVGVADEAPSPVSINSKPEQQQALVIQRAFAGLSAMLHAAGEKPSYYDETHAA 890

Query: 879  VDELKSYLKSIQDAPDVGMAALDATKARVKLVNADPIYTLKRISSGLPKPLDSMMAKLAD 938
            +  +  Y K++Q +PD G AAL A   R  +   DPI TL+R+++GLP+P++  + K+A 
Sbjct: 891  IVAVHDYAKAVQGSPDRGKAALHAVHQRFSMTGHDPIGTLQRVATGLPEPINHHVRKVAH 950

Query: 939  ESWYVVKQEAIKHLEVRWTEDVYKTFQSKLAGRYPFNPASNKDVALADFEAFFAPNGTLD 998
            ++  V+  EA++ LE RW  +VY  FQ +LA RYPF      D +L DFEAFF PNG L 
Sbjct: 951  QTAQVLNVEALRELERRWDAEVYSFFQQRLAERYPF-VVRAPDASLEDFEAFFGPNGRLQ 1009

Query: 999  NFYNQQLKMFIDENISVASDD-SAQSIIRKEVLDQIKQAQKIREAFFNRKGILDVSFSVE 1057
             F +Q LK+F+ +N+    +    +S+IR +V++Q+++A +IRE FF+++G L V FS+E
Sbjct: 1010 QFQDQYLKLFLKDNLEALQNGLQGRSLIRTDVIEQLERADRIRETFFDQRGNLSVQFSIE 1069

Query: 1058 PLSLSNNKRRSVLNVDGQFLAYSHGPRENVELIWPNTLRDSAVSKVTLIPTQTNMSPRSL 1117
            PL LS N+R S+L++DGQ ++Y+HGP +   ++WPNTL     S +TL+    N S  SL
Sbjct: 1070 PLGLSANQRTSLLDLDGQLISYTHGPSQITGIVWPNTLGQHVRSNLTLLRQNGNSS--SL 1127

Query: 1118 QIQGPWAFFRLLDQGDVVSASQTSVDFKFIVDGGEMIYRINAEADANPFTERLFKSFKLS 1177
            + +GPW+ FRLL +G +   + TSVD  F    G M YR+NAE   NP T++ FK F+L 
Sbjct: 1128 EYRGPWSMFRLLSRGALNGRTATSVDLSFKTGDGVMRYRLNAEKAFNPITQQPFKGFRLP 1187

Query: 1178 KTL 1180
            + L
Sbjct: 1188 RGL 1190