Pairwise Alignments

Query, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

Subject, 1267 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

 Score =  136 bits (343), Expect = 1e-35
 Identities = 118/450 (26%), Positives = 196/450 (43%), Gaps = 46/450 (10%)

Query: 128 LPWYLVLGLENAGKTSLINRSGQNFVFSSVMRASGQKSENPYSFDWWIGDESVLIDPDGE 187
           LPWYLV+G+  AGKTSL+  SG +   +S+  A+  +S   +  DW+   ++V+ID  G 
Sbjct: 121 LPWYLVVGMSAAGKTSLLTHSGLS---ASIATANDSESGTQHC-DWYFSPDAVMIDTAGR 176

Query: 188 LLTQGNRSEENDGALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATATASERKAYA 247
            L     + E            F+  L + R +  +NG+VL + +  L  A + ER A A
Sbjct: 177 YLRDDQSASEFSA---------FLRMLRKQRGKAAINGLVLVVSLPELLAANSDERNALA 227

Query: 248 NLLRARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGFTFSMDSVDN 307
             L AR+ E  E L    PVY+ L+K D L GF   F      +R++ LG TF +  +  
Sbjct: 228 AQLVARVEEYAECLDANPPVYLMLSKTDQLPGFSQAFDGLDLHERQQPLGMTFGLSEIRT 287

Query: 308 ------LDSWLEEFASEYTQFVSRVNGMLPHAVAAPMTLEERNAIYSFTRQISGLKEILQ 361
                 L + L++  +   Q V         A    +  E  + + +F +  + L  +L+
Sbjct: 288 NGLHAVLQTRLKKLQAHIRQHVD--------AQMIALGAEADSTLLNFPQYFAALSGVLE 339

Query: 362 QFFQEALASDQFSTSALVRGAYFTSVYQQGVPT-NAFDDAASRRYGLSHAINT----AQR 416
           QF +      +     L+RG YFTS  Q G      ++D  +  + L  A +       +
Sbjct: 340 QFLEHFTRGHRGGAPLLLRGLYFTSALQNGQQLGQVYEDVIADEFALQAAYDEQAGHVGK 399

Query: 417 AKNSTVYFTQKLFTHIIYPEAGLASDNFRVAKN---KRRLMGLSFVACSVATLLLAGTWH 473
           A  +  YF    F  +I+P+  L     R+ +       L+GL+    +   LL  G   
Sbjct: 400 ALGNRSYFITDTFRQVIFPDRDLILYQSRLGRQAAFSPLLLGLA----AATGLLFIGWQA 455

Query: 474 RNYLNNVQHADTVLTKVNQYKEQFPTSRSLASQREVLDPLNKIRE--ATLEFGFFRDKPQ 531
            ++ NN Q  D++  ++   ++     + LA+ +     L  +RE  A ++    +  P 
Sbjct: 456 LSFANNRQWLDSLRGQLAHIEQAADREQQLAAGK----GLEVLREQMANVKAHRLQGVPL 511

Query: 532 YISDFGLYQGHTIGPKVEETYLNLLETRFL 561
            +   GLYQG  I       YL  L ++ L
Sbjct: 512 QLGG-GLYQGEAIHQVTRSAYLAQLRSQAL 540



 Score = 83.2 bits (204), Expect = 1e-19
 Identities = 106/505 (20%), Positives = 202/505 (40%), Gaps = 64/505 (12%)

Query: 674  RVYRNLKLSAQTVLGPSVNLRSLIGPVFDVVFEERVLNSSSLFIPQMLTKRGFDDYFMPQ 733
            R Y  L+L +     P+++L  L+          R L   +  +P + T++G+D +  P+
Sbjct: 734  REYLRLQLESSRQF-PALSLNDLVPQ------PGRALLYGTAGVPAIYTRQGWDTFVKPE 786

Query: 734  SESV--SELALIDSWVL-GQSKTAQFSEADKQALREKIRDLYVADYTNTWRAALNEIDVK 790
               +    L     WVL G+   A   +A+      +    Y  DYT  W   ++ + V+
Sbjct: 787  LIKLVSGNLRNESDWVLDGEGGDALVQKAN---FVREFMTRYKRDYTQAWYKMVSSVGVR 843

Query: 791  YFNDINDAVMVLENITSNLE--PMQRLLRTLDDNTQ----LYSALPKDESALKELLKSPK 844
            +F D+  A   L  + S+++  P++ LL+ ++DNTQ    +  A+P   ++  +   S  
Sbjct: 844  HFADLASATREL-GLLSDVQNSPVKNLLQAVNDNTQWDLPVKQAIPAPGTSRDDGFWS-- 900

Query: 845  YKVASMIET------------PFADLNGMLK---PV----------GSKPAYMTEVLASV 879
             KV  + +             P  D   + K   PV          G+    M   LA++
Sbjct: 901  -KVTGLFDANDTLPANVAPALPAVDDGSLAKRFEPVARVFAENNAEGADSTIMDRYLAAL 959

Query: 880  DELKSYLKSIQDAPDVGMAA-------LDATKARVKLVNADPIYTLKRISSGLPKPLDSM 932
             +LK  + +IQ + DVG ++       L+   + +  V      ++     GL + L  +
Sbjct: 960  RKLKVRMNNIQRSQDVGKSSKQLISETLEGQPSEITTVRNYVESSVDTSQDGLSRSLQGL 1019

Query: 933  MAKLADESWYVVKQEAIKHLEVRWTEDVYKTFQSKLAGRYPFNPASNKDVALADFEAFFA 992
             +     +W  ++  A + +   W + + K ++  +A RYP   +S  + ++ D + F  
Sbjct: 1020 FSLPIQYAWATLRDPAGEQIAKAWAQQIAKPWEQVMAHRYPIAGSSRNEASVKDLQRFVD 1079

Query: 993  P-NGTLDNFYNQQLKMFIDENISVASDDSAQSIIRKEVLDQIKQAQKIREAFFNRKGILD 1051
            P +G L  F   ++            D    +++   +L+ I +A  + +   +     D
Sbjct: 1080 PDSGLLPAFKRNEIGNLAGGEGLGVGDGKGPALVNPGMLNSIDKASSVGQVIASLSD-RD 1138

Query: 1052 VSFSVEPLSLSNNKRRSVLNVDGQFLAYSHGPRENVELIWP--NTLRDSAVSKVTLIPTQ 1109
              F +  L  S N    V  +DGQ   Y +G        WP  +T   + +  VTL  T+
Sbjct: 1139 NGFEI-MLEPSANFTDIVFTLDGQEQHYRNGRSSWNRFAWPGTSTAPGARLDVVTLSGTR 1197

Query: 1110 TNMSPRSLQIQGPWAFFRLLDQGDV 1134
              +        G W   R+ +   V
Sbjct: 1198 VTV----FDFPGRWGLLRMNESARV 1218