Pairwise Alignments

Query, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

Subject, 831 a.a., OmpA domain protein from Pseudomonas putida KT2440

 Score =  188 bits (477), Expect = 2e-51
 Identities = 150/567 (26%), Positives = 248/567 (43%), Gaps = 33/567 (5%)

Query: 9   VRRLKPTVVAALPILLFTTFILLNVAIWWAGPWLEVAGYKPLESIMARVVASSLFTLG-- 66
           + +LK   +   P LL   F L    +W  G      G+  L S++A +    L + G  
Sbjct: 1   MNKLKYYCLRYQPYLLGVAFFLAIFLVWAIG---RAFGFASLHSLLAGIGVFLLLSAGYV 57

Query: 67  CLAVWGIWQWRKLQAFKSEQKREEQLRQDP-----IKVYEQRQEVELNQVMLNMKQSLNK 121
            L   G+ Q   L+    +   +  L   P     + +  +R    + ++  N  +  + 
Sbjct: 58  LLLYRGVGQHHNLEGLLRDDADQAVLSAAPADREEVSLLRERLLQGIERLHSNKPRGTSN 117

Query: 122 HNYLYALPWYLVLGLENAGKTSLINRSGQNFVFSSVMRASGQKSENPYSFDWWIGDESVL 181
            + LYALPWYLV+G   AGK+++I +SG NF ++              + DW+   E+VL
Sbjct: 118 KDALYALPWYLVIGQPAAGKSTMILQSGLNFPYAEREGVRVAGLGGTRNCDWFFSSEAVL 177

Query: 182 IDPDGELLTQGNRSEENDGALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATATAS 241
           +D  G  +     S E  G      W  F+  L + R RRPLNG+++++ +A +   +  
Sbjct: 178 LDTAGRYMN----SPEEAGK-----WRGFLQLLRQHRQRRPLNGLIVSVSIADILHGSVE 228

Query: 242 ERKAYANLLRARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGFTFS 301
           +++  A  LR R++E    L  RLP+Y+  TK DL+ GF  F++    + R EV+G TFS
Sbjct: 229 DQERVAKRLRERIQESCALLEVRLPIYLVFTKCDLIPGFTAFYRQLDDAARGEVMGKTFS 288

Query: 302 MDSVDNLDSWLEEFASEYTQFVSRVNGML--PHAVAAPMTLEERN-AIYSFTRQISGLKE 358
               +  D W + F++   + ++R  G +     V   + +  RN A Y F  +++ LK 
Sbjct: 289 HKGYEQAD-WGQRFSNAMDE-LTRYWGQMASQQLVQQDIQVTRRNDAAYRFPLELAALKP 346

Query: 359 ILQQFFQEALASDQFSTSALVRGAYFTSVYQ-QGVPTNAFDDAASRRYGLSHAINTAQRA 417
            L QF    L ++ +  + ++RG YFT+  Q             + R+ L HA  T    
Sbjct: 347 RLHQFVDSLLRANPYQNAEMLRGFYFTAALQADEAQWGCHGQHVAERFALEHAEGTGTAG 406

Query: 418 KNSTVYFTQKLFTHIIYPE---AGLASDNFRVAKNKRRLMGLSFVACSVATLLLAGTWHR 474
                 F   LF  +I P+     L + N R  + K   +G    A  +A L+L   W  
Sbjct: 407 SQPAPLFINSLFRKVIIPDQHLVALYTSNHRERRRKAGWVG----AAGLAALVLCSLWGW 462

Query: 475 NYLNNVQHADTVLTKVNQYKEQFPTSRSLASQREVLDPLNKIREATLEFGFFRDKPQYIS 534
           +YLNN     ++  ++ Q K     +    +    LD L        E    +  P  + 
Sbjct: 463 SYLNNRATLASIADELAQAKADDQAASGQYTAWRSLDRLRFWAAHYHEQHHAKGVPLGMR 522

Query: 535 DFGLYQGHTIGPKVEETYLNLLETRFL 561
             GLYQGH + P + + Y   L+   L
Sbjct: 523 -LGLYQGHEVEPLLRDRYFATLQNVML 548