Pairwise Alignments

Query, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

Subject, 1206 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

 Score =  809 bits (2089), Expect = 0.0
 Identities = 460/1186 (38%), Positives = 677/1186 (57%), Gaps = 43/1186 (3%)

Query: 19   ALPILLFTTFILLNVAIWWAGPWLEVAGYKPLESIMARVVASSLFTLGCLAVW-GIWQ-- 75
            ALP+LL    +L+ VAIWW GP       +PL S+  R VAS +  L  L  W G+ +  
Sbjct: 22   ALPLLLGLGALLMLVAIWWLGPQWTWREQQPLASVAHRSVASLVLVLVPLLCWLGVLRTR 81

Query: 76   WRKLQAFKSEQKREEQLRQDPIKVYEQRQEVELNQVMLNMKQSLNKHNYLYALPWYLVLG 135
            +R+LQA   E+++     QD    + Q QE  L+Q +     +      LY LPWYLVLG
Sbjct: 82   FRRLQA---ERRQALAAEQDVALPFVQAQERALSQGLERYLDNAGGRRALYRLPWYLVLG 138

Query: 136  LENAGKTSLINRSGQNFVFSSVMRASG---QKSENPYSFDWWIGDESVLIDPDGELLTQ- 191
             E +GK+S I+R+ Q F  + + +A     Q     Y   WW+ D++V+IDP G  ++Q 
Sbjct: 139  DEQSGKSSFIDRTDQRFTLTRIDQAQARGRQTQAMAYPVGWWVSDDAVIIDPPGVFISQK 198

Query: 192  ------GNRSEENDG--ALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATATASER 243
                   N   E      ++ RLW H + WL R RS+R LNG++L +D+  L      +R
Sbjct: 199  PPVGSAANAPSEASAPPGIQARLWEHLLGWLQRKRSQRALNGVLLVVDLPALLHGRPEQR 258

Query: 244  KAYANLLRARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGFTFSMD 303
             A A+ LR RL E+   L  RLP+Y+ LTK DLL GF+ F+     ++R+ +LGFTF +D
Sbjct: 259  VALAHGLRTRLYEVSSQLGARLPLYVVLTKFDLLDGFDQFYSQLPAAKRKSLLGFTFKLD 318

Query: 304  SVDNLDSWLEEFASEYTQFVSRVNGMLPHAVAAPMTLEERNAIYSFTRQISGLKEILQQF 363
            +VD  D+WL+E+   Y + ++++   +   +           ++S   Q+ GL+ ILQ F
Sbjct: 319  AVDAFDAWLDEYDEHYGRLLTQLQEQVIDRLDVLGKTAPCGRLFSLHAQLIGLRPILQAF 378

Query: 364  FQEALASDQFSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYGLSHAINTAQRAKNSTVY 423
             +E LASD+F+T  LVRG Y++SV QQG   NAF   A++ Y     +   +    + VY
Sbjct: 379  LRETLASDRFTTPPLVRGVYWSSVVQQGDMRNAFVREAAQPYTTKLPLREGKAQGKALVY 438

Query: 424  FTQKLFTHIIYPEAGLASDNFRVAKNKRRLMGLSFVACSVATLLLAGTWHRNYLNNVQHA 483
            F Q+ F  +IY EAGLA DN RVA++KR L+ +      +A  +   +W R    N   A
Sbjct: 439  FIQQAFRRVIYQEAGLAGDNVRVARSKRHLLWVGSGVGILAFSIAVASWQRYADINGAKA 498

Query: 484  DTVLTKVNQYKEQFPTSRSLASQREVLDPLNKIREATLEFGFFRDKPQYISDFGLYQGHT 543
             +VL K  +Y       R   + R +L PL++IR+A   FG +R     ++DFGLYQG  
Sbjct: 499  ASVLAKSQEYSGHEVDMRLDPTGRNLLAPLDQIRDAVAVFGDYRAAWPVVADFGLYQGRN 558

Query: 544  IGPKVEETYLNLLETRFLPLLMADTIVALNQAET-DEEKLAVLRVYRMLVDKSGRYQDYV 602
            IGP V+E YL+LL  RFLP L +  I A+N A    E+++A LRVYRM+ D++ R  ++V
Sbjct: 559  IGPLVDEAYLSLLSKRFLPALASGVIDAMNAAPPGSEQQMAALRVYRMIEDRNSRRPEWV 618

Query: 603  MDYFAKYWQKSFSGQRQIQEELLGHLDYAMRHTDLTAERLNGDKGAEQVMRPYDKVIARA 662
             D+ A+ WQ++F GQ Q+Q +L+ HL YA+ + D               +  Y + ++  
Sbjct: 619  EDWMARQWQRAFPGQGQLQRDLMQHLKYALAYADTD-------------LPQYRQRVSEV 665

Query: 663  QVELGSMPNDQRVYRNLKLSAQTVLGPSVNLRSLIGPVFDVVFEERV---LNSSSLFIPQ 719
            Q  L  +P  QRVY  LK  +   L   ++LR  +GP FDVV++           + +  
Sbjct: 666  QQALRKLPLPQRVYAGLKQQSYQQLHAGLDLRHQVGPAFDVVYQPSSGARQGDEDVRLAA 725

Query: 720  MLTKRGFDDYFMPQSESVSELALIDSWVLGQSKTAQFSEADKQALREKIRDLYVADYTNT 779
            MLT +GF +YF P S+  +E+A++D W LG+     +S+ D+ AL E++ +LY ADY ++
Sbjct: 726  MLTAKGFREYFEPHSQRFAEMAMVDQWALGERSQLDYSDVDRDALTERLYNLYSADYIDS 785

Query: 780  WRAALNEIDVKYFNDINDAVMVLENITSNLEPMQRLLRTLDDNTQLYSALPKDE----SA 835
            WR AL    V  F D++  V +LE +T    P+QRLL T+ DNT L      +     S 
Sbjct: 786  WRRALTAFTVADFRDLDHGVAILEQLTGPAAPLQRLLDTVRDNTSLAPPAAVEASGELST 845

Query: 836  LKELLKSPKYKVASMIETPFADLNGMLKPVGSKPAYMTEVLASVDELKSYLKSIQDAPDV 895
            L+     P+ + A  I+  FA L  ML+  G KP+Y  E L +V  +  Y K++QD+PD 
Sbjct: 846  LRVATGKPEQQQALAIQRAFAGLGAMLQATGEKPSYYDETLGAVAAVLDYAKAVQDSPDR 905

Query: 896  GMAALDATKARVKLVNADPIYTLKRISSGLPKPLDSMMAKLADESWYVVKQEAIKHLEVR 955
            G AAL A   R  +   DPI TL+RI++GLP+P+   + KLAD++  V+  EA++ LE R
Sbjct: 906  GKAALQAVHQRFAMTGQDPIGTLQRIATGLPEPISHQVRKLADQTAQVLNVEALRELERR 965

Query: 956  WTEDVYKTFQSKLAGRYPFNPASNKDVALADFEAFFAPNGTLDNFYNQQLKMFIDENI-S 1014
            W  DVY  FQ +LAGRYPF      D +L DFEAFF P G L  F ++ LK+F+ +N+ +
Sbjct: 966  WDADVYSFFQQRLAGRYPF-VVKAPDASLDDFEAFFGPKGRLQQFNDRYLKVFLKDNLEA 1024

Query: 1015 VASDDSAQSIIRKEVLDQIKQAQKIREAFFNRKGILDVSFSVEPLSLSNNKRRSVLNVDG 1074
            + S    QS+IR +V++Q++ A++IRE FF+++G L V FS+EPL LS N+R S+L++DG
Sbjct: 1025 LQSAQHGQSLIRADVIEQLELAERIRETFFDQRGKLSVQFSIEPLGLSANQRTSLLDLDG 1084

Query: 1075 QFLAYSHGPRENVELIWPNTLRDSAVSKVTLIPTQTNMSPRSLQIQGPWAFFRLLDQGDV 1134
            Q +AY+HGP     ++WPNTL     S +TL+    N S  SL+ +GPW+ FRLL +G +
Sbjct: 1085 QLIAYTHGPSHITGIVWPNTLGQQVRSNLTLLRQNGNSS--SLEYRGPWSMFRLLSRGAL 1142

Query: 1135 VSASQTSVDFKFIVDGGEMIYRINAEADANPFTERLFKSFKLSKTL 1180
               + TSVD  F    G M YR+NAE   NP T++ FK F+L + L
Sbjct: 1143 NGRTATSVDLSFRTGDGVMRYRLNAEKAFNPITQQPFKGFRLPRGL 1188