Pairwise Alignments

Query, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

Subject, 1253 a.a., type VI secretion system membrane subunit TssM from Erwinia tracheiphila SCR3

 Score =  247 bits (630), Expect = 5e-69
 Identities = 286/1209 (23%), Positives = 508/1209 (42%), Gaps = 143/1209 (11%)

Query: 28   FILLNVA-----IWWAGPWLEVAGYKPLESIMAR-VVASSLFTLGCLAVWGIWQW----- 76
            F L+ VA     +W  GP++ +    PL  +MAR +V  ++F L    ++G+W+      
Sbjct: 54   FFLIVVATVCGIVWVIGPYIFIGDGYPLADMMARLIVIGAIFFLAI--IYGVWKLLLALR 111

Query: 77   ---RKLQAFKS--EQKREEQLRQ---------DPIKVYEQRQEVELNQVMLNMKQSLNKH 122
               + L  F S  E K EEQ+ +         D IK  +  ++  L + +   K+SLN  
Sbjct: 112  NNPKLLDTFFSSKEHKPEEQVHEINAVIRDAVDYIK--KTNKDAPLIRRLFQPKKSLND- 168

Query: 123  NYLYALPWYLVLGLENAGKTSLINRSGQNFVFSSVMRASGQKSENPYSFDWWIGDESVLI 182
                 LPWY+V+G + AGKTS I  SGQ+F     +    +++ +  + + W  ++++ I
Sbjct: 169  -----LPWYMVIGAKGAGKTSAILNSGQSFPRPEQLSRVCKENASTENCECWFANQALFI 223

Query: 183  DPDGELLTQGNRSEENDGALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATATASE 242
            D      T G   +E  G L    W   +  + + R  + LNG+++ + V+ +     +E
Sbjct: 224  D------TAGKYIDEAHGELSE--WKGLLKSIRKYRPVKALNGVIVTVSVSDIMGRNKAE 275

Query: 243  RKAYANLLRARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGFTFSM 302
                ++ +R+ L +  ++L    PVY+ +TKLD LHGF  +F+  T+ +RE++ G TF  
Sbjct: 276  LYDISSKIRSCLDDTRKSLGVHFPVYVLVTKLDQLHGFAEYFRILTEQEREQIWGVTFPY 335

Query: 303  DSVDNLDSWLEEF----ASEYTQFVSRVNGMLPHAVAAPMTLEERNAIYSFTRQISGLK- 357
               DN+ + + E      SE +   +R+   +           +R  +Y+  +    L  
Sbjct: 336  G--DNMKTAVAELRTLVESELSLLENRIERNMTMRQQEEYENGDRKKMYALPQDFRLLNQ 393

Query: 358  ---EILQQ-FFQEALASDQFSTSALVRGAYFTSVYQQGVPTNA--------------FDD 399
               EILQ  FF       Q  TS  +RG YF+S +Q   P N+              F  
Sbjct: 394  AVIEILQNIFFVSRYDESQSHTS--MRGVYFSSSHQ---PQNSVMINNCTLIQKWRNFIT 448

Query: 400  AASRR---YGLSHAINTAQRAKNSTV---YFTQKLFTHIIYPEAGLASDNFRVAKNKRRL 453
              SR    +  S   +T    K+ +    YF ++LF+ +I  +A L   N RV    R  
Sbjct: 449  NQSREHLAWSASVQKDTEFLIKDISYGRQYFLRELFSEVIVKDATLVRHNLRVVSKYRFQ 508

Query: 454  MGLSFVACSVATLLLAGTWHRNYLNNVQHADTVLTKVNQYKEQFPTSRSLASQREVLDPL 513
                   C +   LL   ++++Y NN  + D +  KV + +    +     +Q  +L  L
Sbjct: 509  NFFGHCLCLMVGALLLNGFYQSYHNNGAYLDAIDIKVGKLENNVQSFLKTTNQ-TMLPVL 567

Query: 514  NKIREATLEFGFFR-DKPQYISDFGLYQGHTIGPKVEETYLNLLETRFLPLLMADTIVAL 572
              + +   EF      +P     +GLY G  +    +  Y   L     P++ +D   AL
Sbjct: 568  LNLAQYLPEFSNLNIQEPDLDYRYGLYVGKEMDRNADGLYHFFLRKLLFPMIESDLHNAL 627

Query: 573  NQAETDEEKLAV---LRVYRMLVDKSGRYQDYVMDYFAKYWQKSFSGQRQIQEELLGHLD 629
              A  D +   V   L++Y M+  +     DYV+ +    W  S   Q   +  L     
Sbjct: 628  RTAVDDAQPAEVYNKLKLYLMISGQGQFNLDYVITHVTDAWDSSGKIQPYQERSLF---- 683

Query: 630  YAMRHTDLTAERLNGDKGAEQVMRPYDKVIARAQVELGSMPNDQRVYRNLKLSAQTVLGP 689
              M H      + +  +  E+V +    ++  A+  L   P+  R+Y  +K + Q     
Sbjct: 684  --MAHLRNLFSQPSWREYGEEVDK---TLLTDARELLNRNPHSVRLYERVKSAMQADAPD 738

Query: 690  SVNLRSLIGPVFDVVFEERVLNSSSLFIPQMLTKRGFDDYFMPQSESV-SELALIDSWVL 748
            ++ L  +       +F           +P + T  G+   F  +  SV  +L   D W++
Sbjct: 739  NLTLNKITDEQAGQIFTSTDSTMLEKGVPGLFTYNGYHQIFKKKLSSVLKKLDDEDRWIM 798

Query: 749  GQSKTA---QFSEADKQA-----LREKIRDLYVADYTNTWRAALNEIDVKYFNDINDA-- 798
            G + +A   +   AD  A      ++ +  LY+ +YT TW+  L  I ++     N +  
Sbjct: 799  GNTASAASLKMLRADPTAGIVDPTKDTLTRLYLQEYTQTWQKFLQSIRLRSDGLDNQSMG 858

Query: 799  ----VMVLENITSNLEPMQRLLRTLDDNTQLYSALPKD--------------ESALK--- 837
                + ++  + S+  P+  L +     T L +  P++              ++A K   
Sbjct: 859  LSFDIYMMRKLVSSNSPLINLAKVAVKETTLAAEQPENLLKGQNIIANNQLIDAASKVNL 918

Query: 838  ELLKSPKYKVASMIETPFADL----NGMLKPVGSKPAYMTEVLASVDEL-KSYLKSIQDA 892
             L    K  +   ++  FA L     G    VG + A  T +   +D L + Y + +   
Sbjct: 919  ALAAQEKIILRRGVDDYFASLREFVGGEADAVG-RSASGTRLATIIDVLNEQYTQLVISD 977

Query: 893  PDVGMAALDATKARVKLVNADPIYTLKRISSGLPKPLDSMMAKLADESWYVVKQEAIKHL 952
              +    L       + ++A+        S+  P P   ++A L   ++  V  + + + 
Sbjct: 978  SAIQQGNLPEVSDIGQRLSAE--------SAVWPDPFKYIIAPLLTGAYKRVNYQVVSNA 1029

Query: 953  EVRWTEDVYKTFQSKLAGRYPFNPASNKDVALADFEAFFAPNGTLDNFYNQQLKMFIDEN 1012
                   + +  ++ L GRYPF   + ++V+L DFE FFA  G +D+++ + L   +D +
Sbjct: 1030 NKTIAASLGEVCRTTLQGRYPF-VDTTEEVSLRDFEQFFAVGGIVDDYFMKNLADKVDTS 1088

Query: 1013 ISVASDDSAQSIIRKEVLDQIKQAQKIREAFF-NRKGILDVSFSVEPLSLSNNKRRSVLN 1071
                  +    +   E L   +  Q+I++AFF N    L V+++V    +S    +  LN
Sbjct: 1089 TRPWRYERNVDVSSSEGLGIFELTQQIQKAFFQNGNNKLAVNYTVAIPYMSPTVSQLTLN 1148

Query: 1072 VDGQFLAYSHGPRENVELIWPNTLRDSAVSKVTLIPTQTNMSPRSLQIQGPWAFFRLLDQ 1131
             DG  + Y+HGP       WP    +S VS ++L P  T +    +  +GPWA  R LD 
Sbjct: 1149 FDGNIMTYAHGPVMPKSFNWPGKRSESIVS-MSLKPRIT-LEDNGVTKKGPWALMRWLDT 1206

Query: 1132 GDVVSASQT 1140
             + +  S T
Sbjct: 1207 VEDIETSDT 1215