Pairwise Alignments

Query, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

Subject, 1206 a.a., type VI secretion protein IcmF from Enterobacter asburiae PDN3

 Score =  343 bits (879), Expect = 6e-98
 Identities = 309/1213 (25%), Positives = 518/1213 (42%), Gaps = 114/1213 (9%)

Query: 31   LNVAIWWAGPWLEVAGYKPLESIMARVVASS----LFTLGCLA--VWGIWQWRKLQAFKS 84
            L   IW  GP L +   +PLES   R+++ +    L+  G +   ++  W  RKL   K 
Sbjct: 23   LAAVIWMIGPLLSIVDTRPLESEQNRIISIAVVYLLWAQGHILPRLYNAWLNRKLMD-KL 81

Query: 85   EQKREEQLRQDPIKVYEQRQEVELNQVMLNMKQSLNKH----------------NYLYAL 128
            ++    Q   DP K     +++  ++     +     H                 YLY L
Sbjct: 82   KENTASQEAADPQKRLNSEEQILASRFDEAAQMLKKAHFSKAGQGAQWTQRFSTQYLYQL 141

Query: 129  PWYLVLGLENAGKTSLINRSGQNFVFSSVMRASGQKS-ENPYSFDWWIGDESVLIDPDGE 187
            PWY+++G   +GKT+ +  SG  F  +     +  +      + DWW  +E+VL+D  G 
Sbjct: 142  PWYVIIGAPGSGKTTALVNSGLQFPLADRFGKTALRGIGGTRNCDWWFTNEAVLLDTAGR 201

Query: 188  LLTQGNRSEENDGALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATATASERKAYA 247
              TQ +   ++ G      WL F+  L + R R+P+NG+++ + ++ L T +A   +  A
Sbjct: 202  YTTQESEQVQDAGE-----WLEFMGLLRKYRRRQPINGVIITISISDLLTQSAEASRQQA 256

Query: 248  NLLRARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGFTFSMDSVDN 307
              LR RL EL E L  R PVY+ +TK DLL GF  +F  Y K+QR+++ GFT   +   +
Sbjct: 257  VNLRQRLSELHEQLGIRFPVYVMVTKADLLKGFRAWFADYDKAQRDQIWGFTLPWEQTKH 316

Query: 308  LD-SWLEEFASEYTQFVSRVNGMLPHAVAAPMTLEERNAIYSFTRQISGLKEILQQFFQE 366
             D   +  F  E++    R++  LP  +      + R   Y F ++ + L+ +L  +   
Sbjct: 317  ADYDLMGNFQQEFSLLQQRLDAGLPETMLKEHDAKTRAEAYLFPQEFAALRPLLADYLST 376

Query: 367  ALASDQFSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYGL---SHAINTAQRAKNSTV- 422
              A   F T    RG YF S  Q+G+P +      +R   L     A N    +K + + 
Sbjct: 377  VFARSNFETEFSPRGIYFASGTQEGMPFDRVMGELNRALSLPEGGEADNWDSVSKEAPIP 436

Query: 423  ------YFTQKLFTHIIYPEAGLASDNFRVAKNKRRLMGLSFVACSVATLLLAGTWHRNY 476
                  +F + L  ++I+ EAG+A +N       R ++   + A      +L G W  +Y
Sbjct: 437  GAKGQSFFIKNLLQNVIFQEAGIAGENRWWELRNRAVIWSGYAALLALLAILGGLWLTSY 496

Query: 477  LNNVQHADTVLTKVNQYKEQFPTSRSLASQR-----EVLDPLNKIREATLEFGFFRDKPQ 531
              N  + + V  KV    +Q   S++L +Q      ++L  LN + +      F  + P 
Sbjct: 497  AKNKAYLEEVDAKVPLLDQQ---SKALQNQTQRDLFDLLPLLNGLVDLPKSDAFDVNDPP 553

Query: 532  YISDFGLYQGHTIGPKVEETYLNLLETRFLP-LLMADTIVALNQAETD-EEKLAVLRVYR 589
                 GLY+G  +    +  Y   L+   LP + M  T    N   +D E     L+ Y+
Sbjct: 554  VSRRMGLYRGDDVSDAAQSLYQKALDQMLLPAVAMHITTWLRNDNGSDVEYSYEALKAYQ 613

Query: 590  MLVDKSGRYQDYVMDYFAKYWQKSFSGQRQIQEELLGHLDYAMRHTDLTAERLNGDKGAE 649
            ML         ++  +     Q++    + + +  L  L++ +  T L   ++     A+
Sbjct: 614  MLYQPKHYDGKFLHSWVMLNLQRNL--PQNVTKAQLQQLEWHL--TQLLEPKIQASPYAQ 669

Query: 650  QVMRPYDKVIARAQVELGSMPNDQRVYRNLK--LSAQTVLGPSVNLRSLIGPVFDVVFEE 707
                  + ++AR +  +G  P   RVY  LK  L     L P V+L  L GP  ++VF  
Sbjct: 670  D-----ESLVARERAMIGQQPLSTRVYGRLKRLLEHDDNLRP-VSLSDLGGPQSELVFSR 723

Query: 708  RVLNSSSLFIPQMLTKRGFDDYFMPQSESV-SELALIDSWVLGQSKTAQFSEADKQALRE 766
            +     S  +P + T  G+   F  Q +SV + L   D+WVLG    A  ++ DKQ +  
Sbjct: 724  KSGKPVSEGVPGLYTPDGYWKSFNGQIDSVTTALHEDDAWVLG----AATAQEDKQQIDN 779

Query: 767  KIRDLYVADYTNTWRAALNEIDVKYFNDINDAVMVLENITSNLEPMQRLLRTLDDNTQLY 826
             +R LY+ D+   W   L +I +    D++  +     ++    P++RL++ L     L 
Sbjct: 780  AVRQLYMRDFIANWDRFLADIQLNNSADLSQRINTARLLSGANSPLRRLVQNLSQVLTLS 839

Query: 827  SALPKDESALKELLKSPK----------------YKVASMIETP-------FADLNGMLK 863
               P  E A K   +S +                 + A + + P       +A +  + +
Sbjct: 840  RNAPAPEDADKAQAQSNRATRTLEALFSNNDAAPTQAAVVTQAPEQLVTDHYAPMIELAQ 899

Query: 864  PV--GSKPAYMTEVLASVDELKSYLKSIQDAPDVGMAALDATKARVKLVNADPIYTLKRI 921
            P+  G K     + L  VDEL  YL ++QDA + GM A             + I  L+  
Sbjct: 900  PLEKGGKTIVFDDFLKQVDELYRYLTAVQDAANSGMPA----------PGGEAISRLQAS 949

Query: 922  SSGLPKPLDSMMAKLADESWYVVKQEAIKHLEVRWTEDVYKTFQSKLAGRYPFNPASNKD 981
            +  LP  L +M + +A  +    ++  ++++  R   +V    +  +AGRYP   +++ +
Sbjct: 950  AGRLPGGLQTMFSNMAVGASSDTQRRDLENVRKRINVEVGGFCRQAIAGRYPLVRSASTE 1009

Query: 982  VALADFEAFFAP-NGTLDNFYNQQLKMFIDENIS----VASDDSAQSIIRKEVLDQIKQA 1036
            V   D    FAP  G +D F+   L   +D   +    +   D       + +L   +QA
Sbjct: 1010 VTPDDLARMFAPGTGLMDAFFRDNLTNKVDTTQANWRFMPGIDGKTLPGSEGLLRPFQQA 1069

Query: 1037 QKIREAFFNRKGILDVSF--SVEPLSLSNNKRRSVLNVDGQFLAYSHGPRENVELIWPNT 1094
            Q IR+AFF   G    SF  +V  + + N      L+VDGQ L YSHGP+    + WP  
Sbjct: 1070 QSIRDAFF-ANGATTPSFKVTVRTVRMDNTILNLTLDVDGQLLRYSHGPQAVQIMNWPG- 1127

Query: 1095 LRDSAVSKVTLIPTQTNMSPRSLQIQGPWAFFRLLDQGDV-VSASQTSVDFKFIVDGGEM 1153
                  ++V +     N S  +L   G WA  R  D+      A   S    F VDG ++
Sbjct: 1128 --PGGTNQVRMQLGLANGSTATLVTNGAWALNRFFDKASTSPGAGSLSRQATFSVDGHQV 1185

Query: 1154 IYRINAEADANPF 1166
                   +  NPF
Sbjct: 1186 TLEFAPNSIRNPF 1198