Pairwise Alignments

Query, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

Subject, 1416 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score = 73.2 bits (178), Expect = 1e-16
 Identities = 82/371 (22%), Positives = 144/371 (38%), Gaps = 67/371 (18%)

Query: 116 KQSLNKHNYLYALPWYLVLGLENAGKTSLINRSGQNFVFSSVMRASGQKSENPYSFDWWI 175
           +++L+++ YL  +PWYL  G+       L+  + +       +R   +  + P+ F W  
Sbjct: 95  RETLSRNVYL--VPWYLRTGVVPGDDGGLLTCAEE-------VRPPVESKDRPFGFHWRF 145

Query: 176 GDESVLIDPDGELLTQGNRSEENDGALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHL 235
            D +V+ID D                  R  W   +D L R R   P +G++L + +  L
Sbjct: 146 YDRAVVIDIDDA----------------RVAWKGVLDQLARHRVMMPADGVILTIPLEEL 189

Query: 236 ATATASERKAYANLLRARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEV 295
                +   A    L ARL E+  TL   LPVY+ +T  D + GF    +   +  R+ +
Sbjct: 190 EDVRRAA--ARGTELYARLWEIQRTLGLALPVYVVVTGCDAIPGFPLLAEALPEPLRDGM 247

Query: 296 LGFT--FSMDSVDNLDSWLEEFASEYTQFVSRVNGMLPHAVAAPMTLEERNAIYSFTRQI 353
           LG++  +++++V     +  +   E  Q V+     L   V      E+   I + T ++
Sbjct: 248 LGWSSPYALETV-----FTPDVVGEALQSVAAGMLALQLEVFGAAAREDGAQIVALTDRL 302

Query: 354 SGLKEILQQFFQEALASDQFSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYGLSHAINT 413
           +G +  L+     A     +  +  VRG YF                             
Sbjct: 303 TGTEAALRAMLGTAFKRTAYQETLYVRGLYF----------------------------V 334

Query: 414 AQRAKNSTVYFTQKLFTHIIYPEAGLASDN--FRVAKNKRR---LMGLSFVACSVATLLL 468
            + A  +   F + L    I+PEAGL      F   +  RR    +G +  + +   LL 
Sbjct: 335 GRTAPETPAVFGRDLLNRKIFPEAGLPKPTRAFAATRTLRRHAWPVGTAVASAAAILLLW 394

Query: 469 AGTWHRNYLNN 479
            G    N L++
Sbjct: 395 MGVHRVNTLSD 405



 Score = 32.3 bits (72), Expect = 3e-04
 Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 30/191 (15%)

Query: 959  DVYKTFQSKLAGRYPFNPA--SNKDVAL--ADFEAFFAPNGTLDNFYNQQLK-------- 1006
            ++   F   LAGR+PF P   +  DVA+  A ++AF A  G +     +  +        
Sbjct: 1060 EIATAFNVSLAGRFPFGPVGENQADVAMVRAFYDAFDARQGYVIEGLRRSTRLGTAGHDA 1119

Query: 1007 MFIDENISVASDDSAQSIIRKE----VLDQIKQAQKIREAFFNRKGILDVSFSVEPLSLS 1062
            +   E +++A      + +  +    +LD   +  + REA      I++   S    +++
Sbjct: 1120 LRFMETMALAKPALTAATVTDQSGGLLLDPTFRVNRGREA--GGTNIIEWKLSTPAGTIA 1177

Query: 1063 NNKRRSVLNVDGQFLAYSHGPRENVELIWPNTLRDSAVSKVTLIPTQTNMSPRSLQI--Q 1120
            N   RS L        +  G R  V L W    +D  +  V  +   +++   +L    +
Sbjct: 1178 NIGARSPLR-------WYPGDRVVVSLRW---AKDGKLVPVAGVGASSSVDEATLTFAYE 1227

Query: 1121 GPWAFFRLLDQ 1131
            GPWA F L+ Q
Sbjct: 1228 GPWALFALVRQ 1238