Pairwise Alignments

Query, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

Subject, 1105 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score = 51.6 bits (122), Expect = 4e-10
 Identities = 62/276 (22%), Positives = 102/276 (36%), Gaps = 52/276 (18%)

Query: 128 LPWYLVLGLENAGKTSLINRSGQNFVFSSVMRASGQKSENPYSFDWWIGDESVLIDPDGE 187
           +PW+L  G+            G   + +        +  N  +  WW  + + ++     
Sbjct: 126 IPWFLAFGV-----------GGPALLATDPTHVRWPEDGNTENGCWWFCEGAAILHAG-- 172

Query: 188 LLTQGNRSEENDGALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATATASE--RKA 245
                  ++  DG      W   V  + +   RRPL+GI+L +    L  A   E  R+A
Sbjct: 173 -------ADSADGTKLDASWPSLVAAVRKRPMRRPLDGILLLVGADELRAAAEREAPRRA 225

Query: 246 YANL---LRARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGFTFSM 302
            A     LRARLR + + L    PV++A+ + + L GF         +  + VLG+T   
Sbjct: 226 LAKRAESLRARLRSIRDELGMVCPVHVAVVRAESLDGFGDLCATIPAAMLDSVLGWTSPY 285

Query: 303 DSVDNLDSWLEEFASEYTQFVSRVNGMLPHAVAAPMTLEERNAIYSFT------------ 350
           D       WL  F  E  +     +     A+ + + L E +A+   T            
Sbjct: 286 D-------WLAPF--EPARMAEAFD-----AIQSDLALLEADALAGVTAAGTACVRLPLL 331

Query: 351 -RQISGLKEILQQFFQEALASDQFSTSALVRGAYFT 385
              +  L+  L  F   AL  D+ S    +RG   T
Sbjct: 332 PASLETLRHPLALFLDGALGGDEASEPFPLRGIALT 367