Pairwise Alignments

Query, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

Subject, 1159 a.a., IcmF family protein from Agrobacterium fabrum C58

 Score =  335 bits (858), Expect = 2e-95
 Identities = 296/1180 (25%), Positives = 506/1180 (42%), Gaps = 92/1180 (7%)

Query: 29   ILLNVAIWWAGPWLEVAGYKPLESIMARVVASSLFTLGCLAVWGIWQWRKLQAFKSEQKR 88
            I L V +W+ G  + +  +KPL ++ AR++A  +     +AVW ++    +      +K+
Sbjct: 32   IALCVVVWFYGYLIALGDFKPLGTVQARLIAIGII----VAVWLVYI---IVTIYRGRKQ 84

Query: 89   EEQLRQDPIKVYEQRQEVELNQVMLNMKQSL--------NKHNYLYALPWYLVLGLENAG 140
            +++L     +     ++ E+ ++   +K++L         +  Y+Y LPWY++ G   +G
Sbjct: 85   DKELVDSIEREALANRQAEIGEIQTRLKEALALLRRVTKKRFGYIYDLPWYVIFGAPGSG 144

Query: 141  KTSLINRSGQNFVFSSVMRASGQKS-ENPYSFDWWIGDESVLIDPDGELLTQGNRSEEND 199
            KT+ +  SG  F     +  +  K      + +WW  DE++LID  G   TQ    ++ D
Sbjct: 145  KTTALTNSGLQFPLGDALGENAVKGIGGTRNCNWWFADEAILIDTAGRYTTQ----DDLD 200

Query: 200  GALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATATASERKAYANLLRARLRELME 259
            G+  +  W  F+  L R R  +P+NG ++ L +  L      E++     +R RL EL E
Sbjct: 201  GS-SKAGWEGFLGLLRRYRRSQPINGALVTLSIPDLLNRDPEEQRQELRSIRQRLSELDE 259

Query: 260  TLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGFTFSMDSVDNLDSWLEEFASEY 319
             L  R+PVYI LTK DLLHGF  FF  + K+ R++V G TF +D   + ++  +    E+
Sbjct: 260  YLHARVPVYIVLTKADLLHGFVEFFDGFNKTDRQQVWGTTFKLDESYSAENLPQRLTEEF 319

Query: 320  TQFVSRVNGMLPHAVAAPMTLEERNAIYSFTRQISGLKEILQQFFQEALASDQFSTSALV 379
                 RV+ ML   +      E R  I+ F  +++ LK+ L +   E  AS     + L+
Sbjct: 320  ELLQQRVDAMLIERLQQEQNAEIRGRIFRFPAELARLKDRLHEALAELCASSPLIEAPLL 379

Query: 380  RGAYFTSVYQQGVPTNAFDDAASRRYGLSHAINTAQRAKNSTVYFTQKLFTHIIYPEAGL 439
            RG YF S  Q   P      AASR                   YF  +LF  +I+PEA L
Sbjct: 380  RGVYFASGTQ---PETEKSPAASR---------------TRRSYFLSRLFKDVIFPEAAL 421

Query: 440  ASDNFRVAKNKRRLMGLSFVACSVATLLLAGTWHRNYLNNVQ---HADTVLTKVNQYKEQ 496
             + + R+++ +  +  +++   + A  ++   W   Y  N Q    AD  L    Q  + 
Sbjct: 422  VTRDKRLSRRQLLVRRIAYAVSATAVAIVFTGWIFTYFANTQALAEADRKLGAYEQLVQG 481

Query: 497  FPTSR-SLASQREVLDPLNKIREATLEFGFFRDKPQYISDFGLYQGHTIGPKVEETYLNL 555
             P    + A    +L  L+ +R+  +  GF R++   +S FGL Q   I  +  + Y   
Sbjct: 482  IPVREVADADFLRILPALDNLRD--VNSGFARERVWNVS-FGLDQEDKIAGRQRDAYQRA 538

Query: 556  LETRFLPLLMADTIVALNQAETDEEKLAVLRVYRMLVDKSGRYQDYVMDYFAKYWQKSFS 615
            L    LP ++      L   +        L++Y ML    G  +D++     + +   + 
Sbjct: 539  LNALLLPRMIVQLQKQLKDEKDVTRTFNSLKLYGMLGGMGGLDRDFLTTQTHQMFASLYP 598

Query: 616  GQRQIQEELLGHLDYAMRHTDLTAERLNGDKGAEQVMRPYD---KVIARAQVELGSMPND 672
            G  +           A    D  A+ L     A+ V+ P +   ++IA A+  +      
Sbjct: 599  GDGRAA---------AREALDQHAKAL-----ADGVLAPIELDARLIATARETIRDQAIG 644

Query: 673  QRVYRNLKLSAQTVLGPSVNLRSLIGPVFDVVFEERVLNSSSLFIPQMLTKRGFDDYFMP 732
             R Y  L    Q          +  GP+ +  FE R     +  I  + T  G+    +P
Sbjct: 645  TRAYDILAGLPQVRELMEWTPATAFGPLGERAFERRSKAPMAEGIEGLFTADGYRRVVIP 704

Query: 733  QSESVSELALIDSWVLGQSKTAQFSEADKQALREKIRDLYVADYTNTWRAALNEIDVKYF 792
            Q    + +AL + WV G     + +  ++ A  +    +Y   +   W   L+++ VK  
Sbjct: 705  QVAHAARVALSEGWVRGSDDAIKGATVEQVA--QAALQIYFDRFEKIWADTLSDLRVKPS 762

Query: 793  NDINDAVMVLENITSNLEPMQRLLRTLDDNTQ---------LYSALPKDESA--LKELLK 841
              + DAV     + +    +    R++ + T          L SA   D +A  L   + 
Sbjct: 763  QSLGDAVETTRALANERNIVVEAARSIAEATDLRPGANPAALASAAEGDATAAVLAATVN 822

Query: 842  S--PKYKVASMIETPFADLNGMLKPVGSKP--AYMTEVLASVDELKSYLKSIQDAPDVGM 897
            +  P  ++  M+ T  A   G  +P G K   +   ++LA    L   L       D   
Sbjct: 823  AADPYARLRDMLATKGAATTGE-QPNGDKTGGSPSEQLLAHFKLLNEQLARSATTSDEVA 881

Query: 898  AALDATKARVKLVNADPIYTLKRISSGLPKPLDSMMAKLADESWYVVKQEAIKHLEVRWT 957
               D      K  N D    L + +  LP PLD  +A +A +   +  + A   +   WT
Sbjct: 882  KVFDVDSQLTK-ANQD----LLQQARELPAPLDVWVAGVAADVGSLAVKSARSRIAELWT 936

Query: 958  EDVYKTFQSKLAGRYPFNPASNKDVALADFEAFFAPNGTLDNFYNQQLKMFIDENISVAS 1017
             D      S + GRYPF+ AS++DVA+ADF   FAP G   +F+ Q+++ F+D+  +  S
Sbjct: 937  ADSASLCSSIVTGRYPFDRASSRDVAIADFTRLFAPTGVFQSFFKQRMEPFVDKTTTPWS 996

Query: 1018 --DDSAQSIIRKEVLDQIKQAQKIREAFF-NRKGILDVSFSVEPLSLSNNKRRSVLNVDG 1074
                   + I    + Q + A KI  AFF N      VS +V+P+SL+N     +L ++G
Sbjct: 997  WKGTFGAAGIPSSAVAQFENADKISRAFFPNGSETPTVSINVKPVSLTNASSAVMLEIEG 1056

Query: 1075 QFLAYSHGPRENVELIWPNTLRDSAVSKVTLIPTQTNMSPRSLQIQGPWAFFRLLDQGDV 1134
            + + Y HGP +   + WP+    +++S++   P     +       G W+ FRL D  ++
Sbjct: 1057 ERVVYYHGPIQAKSITWPSRENTASLSRIAFQPGGWQQAKTE---NGDWSPFRLFDGANI 1113

Query: 1135 VSASQTSVDFKFIVDGGEMIYRINAEADANPFTERLFKSF 1174
             + S   +  +F        + I   +  NPF      SF
Sbjct: 1114 ENQSGELLRVRFENGVQAAEFDIQFGSVLNPFKLDAIASF 1153