Pairwise Alignments

Query, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

Subject, 1262 a.a., hypothetical protein from Acinetobacter radioresistens SK82

 Score =  202 bits (514), Expect = 1e-55
 Identities = 256/1203 (21%), Positives = 475/1203 (39%), Gaps = 176/1203 (14%)

Query: 1    MWKFIVGIVRRLKPTVVAALPILLFTTFILLNVAIWWAGPWLEVAGYKPLESIMARVVAS 60
            +W++I       +  +  +L + L +++ +L   I+WA                  + AS
Sbjct: 8    LWQYITNP----RAIIALSLFVALVSSYSVLPRHIFWA------------------LAAS 45

Query: 61   SLFTLGCLAVWGIWQWRKLQAFKSEQKREEQLRQDPIKVYEQRQEVE----LNQVMLNMK 116
             +  L C  ++ + Q R+       ++    ++QD    Y Q++  E    +NQ M +  
Sbjct: 46   YMLGLICYGIYWLVQRRRHTV--QGEELANAIQQDTKAEYGQQKNKEELQLINQQMKDSI 103

Query: 117  QSLNKHNY--------LYALPWYLVLGLENAGKTSLINRSGQNFVFSSV---MRASGQKS 165
            Q + K           LY LPWY+V+G   AGK+S I  SG  F F      M ++G   
Sbjct: 104  QLIRKSKLGDKKGNAALYELPWYMVIGNPAAGKSSAIYNSGLKFPFEETHQKMISAGLSG 163

Query: 166  ENPYSFDWWIGDESVLIDPDGELLTQGNRSEENDGALERRLWLHFVDWLDRTRSRRPLNG 225
                + DW+   E VL+D  G          E         WL F++ L + RS+ P+NG
Sbjct: 164  TR--NCDWFFSTEGVLLDTAGRYSVYAEDHSE---------WLGFLNILKKNRSKAPVNG 212

Query: 226  IVLALDVAHLATATASERKAYANLLRARLRELMETLSTRLPVYIALTKLDLLHGFEPFFK 285
            +++ + +A L   +       A  LRAR+++L E L   +PVY+  +K+DL+ GF  FF 
Sbjct: 213  LIVIVSIAELIGQSPENSLKLAKNLRARIQDLTERLEVVVPVYLVFSKMDLIAGFTEFFD 272

Query: 286  HYTKSQREEVLGFTFSMDSVDNLDSWLEEFASEYTQFVSRVNGMLPHAVAAPMTLEERNA 345
             Y   +  +  G T   +  ++  + +E F   Y      + G+    ++   +     +
Sbjct: 273  CYEAQEYNQAWGATLPYEQ-NSSQNAVELFEYHYNLLYDGLKGVSTTHLSRRHSQNISPS 331

Query: 346  IYSFTRQISGLKEILQQFFQEALASDQFSTSALVRGAYFTSVYQQGVPTNAFDDAASRRY 405
            + +F  +   LK  L+ F       + +    + RG YFTS  Q+G+  +      ++ +
Sbjct: 332  VMTFPLEFKTLKPALKSFISTLFEDNPYQFQPVFRGFYFTSALQEGIIESPMTKQIAQEF 391

Query: 406  GLSHAINTAQRAKNSTV-----YFTQKLFTHIIYPEAGLASDNFRVAKNKRRLMGLSFVA 460
             LS  I  A+   ++       YF + LF++II  +  L   +    + ++R   L+F+ 
Sbjct: 392  HLSQ-IPQAEPGDHNIAPQNHGYFLKGLFSNIILKDKNLVKQHINPGRKRQRY--LAFIG 448

Query: 461  CSVATLLLAGTWHRNYLNNVQ-------HADTVLTKVNQYKEQFPTSRSLASQREVLDPL 513
              +   ++ G W  +Y NN Q         D V+       +Q PT          L+ L
Sbjct: 449  ALLGVSIILGLWVWSYRNNQQLIADVQADLDKVVHLEKASGQQLPTQ---------LEAL 499

Query: 514  NKIREATLEFGFFRDKPQYISDFGLYQGHTIGPKVEETYLNLLETRFLPLLMADTIVALN 573
              ++E   +   F +       FGLYQG+ +   ++  YL  +    L     +    L 
Sbjct: 500  LILQERLQQLDEFDEHRPLKFRFGLYQGNQLRETLKAEYLKGIRQIVLQPTQQNIAQYLQ 559

Query: 574  QAETDEEKLAV--LRVYRMLVDKSGRYQD----------------------------YVM 603
            + + +EE L    + V    V K+G+Y +                            ++ 
Sbjct: 560  RVKNNEETLKANHINVEVKQVAKTGQYLEPLDTNPQDAYNALKAYLMMSNPQYMDAGHLS 619

Query: 604  DYFAKYWQKSFSGQR--QIQEELLGHLDYAMRHTDLTAERLNGDKGAEQVMRPYDKVIAR 661
            D   ++W+      R    + +++   +  + +    A  L GD+    +      V   
Sbjct: 620  DQVTRFWRSWVDANRGQMSRGDMIQQAEQVLSY----AMTLTGDQQFPVLDADTQLVDQT 675

Query: 662  AQVELG---SMPNDQRVYRNLKLSAQTVLGPSVNLRSLIGPVFDVVFEERVLNSSSLFIP 718
             QV L     MP   RVY  +K+ A  V  P++    ++G         +     S  +P
Sbjct: 676  RQVLLSVIRGMPARDRVYNEIKMRA-AVRFPALTAGQIVGE------NNKGAVLGSYALP 728

Query: 719  QMLTKRGFDDYFMPQ-SESVSELALIDSWVLG--QSKTAQFSEADKQALREKIRDLYVAD 775
             + T++ +D+Y      E+ ++      WVL   QS    FS + +Q +R+++  LY  +
Sbjct: 729  GVFTQKAWDEYVSSAIDEAANKPTDSKDWVLNSRQSDDLTFSGSPEQ-IRKQLVALYKQE 787

Query: 776  YTNTWRAALNEIDVKYFNDINDAVMVLENITSNLEPMQRLLRTLDDN-----------TQ 824
            Y   WR  LN I   Y+          +NI    EP    +R L +             Q
Sbjct: 788  YIAEWRKFLNGI---YYAKAPQFSQQSKNIDILGEPQNSPIRILFERIAIETNWDNPVVQ 844

Query: 825  LYSALPK-------DESALKELLKSPKYKVASMIETPFADLNGMLKPVGSK------PAY 871
               A+P+           L         +V++  + P +    M   +  K       + 
Sbjct: 845  AELAVPQKGFIAWFKRKVLNRSDAQMSQQVSNKAQGPISQEYQMFYQLVRKRDDQQNKSL 904

Query: 872  MTEVLASVDELKSYLKSIQDAPDVGMAALDATKARV----KLVNADPIYTLKRISSGLPK 927
            + E + ++ +++S    +++A ++G +A+   K  +     + N    +  +R+  GL  
Sbjct: 905  LDEYMQNLAQVRSKFNDLKNAGEIGPSAMALVKQTISDQNSVFNTAQKHIDERMLVGLND 964

Query: 928  PLDSMMAKL----ADESWYVVKQEAIKHLEVRWTEDVYKTFQSKLAGRYPFNPASNKDVA 983
                M+ KL      +S+  +   A + L   W    Y+ FQ+ L+ +YPFN + +    
Sbjct: 965  IDQQMIQKLLVSPLTQSFASLITPAQEELNKLWIIQAYQPFQANLSQKYPFNSSVSLQAT 1024

Query: 984  LADFEAFFAPNGTLDNFYNQQL-KMFIDENISVAS---DDSAQSIIRKEVLDQIKQAQKI 1039
              +    F   G++  F  + L  + I    ++ S    D   S+  + V++  +    I
Sbjct: 1025 SNEIGQIFGDTGSIARFVKEILDPLVIRRGYTLTSKTWKDLGISLNPQFVMNFQRYVAPI 1084

Query: 1040 REAFFNRKGILDVSFSVEPLSLSNNKRRSVLN---------VDGQFLAYSHGPRENVELI 1090
                    G LD   +    + SN +   + N         +DGQ + Y +G ++ V  +
Sbjct: 1085 NGM---ATGTLDQPTATPAANQSNFQFYPLQNPQLLSYTIDIDGQRMLYENGIQQWVNFV 1141

Query: 1091 WPN 1093
            WPN
Sbjct: 1142 WPN 1144