Pairwise Alignments

Query, 469 a.a., type VI secretion system protein TssA from Vibrio cholerae E7946 ATCC 55056

Subject, 517 a.a., type VI secretion protein ImpA from Pseudomonas simiae WCS417

 Score =  107 bits (266), Expect = 1e-27
 Identities = 105/480 (21%), Positives = 200/480 (41%), Gaps = 34/480 (7%)

Query: 6   YRQCVAKPISSSNPVGERLVDHPLFDFIEDQMMKVGSLSHASVQ--WDEVEHSTLKLLGE 63
           Y +    P S +   G  +     ++ +E ++ K  S+ H + Q  W ++  ++ +LL +
Sbjct: 11  YLEVARSPCSQTCFAGGDMRFSSEYECLESELTKAQSI-HGTRQPDWHKILETSERLLRQ 69

Query: 64  QSKDIKLLVYLLQCLHNQVTPTRLITSFAVMSEFLNQYWNDSYPAPGPRGNLPRRKFFSQ 123
           QSKD++++V++   L+ + +   L+    ++      +W +SYP         R   F+ 
Sbjct: 70  QSKDLRVVVWMTWALYQRESYPGLLAGLGLLRYLCEHHWVESYPEK----LRTRSAAFAW 125

Query: 124 MAQRFTTVIEKFDFHHLDEADRQALQAAVEEWQQAVEKQ-----GLSSELVESVVVRITA 178
           +  R    IE      L   ++Q L  AV E   ++E+      G  + L+  +  ++  
Sbjct: 126 LVLR----IEPLFAQGLPLQNQQLLFRAVLEHLTSLEELWGRHLGDDAPLLLPIRRQLAQ 181

Query: 179 EIKRAEQRQQVTAQ-SSAERETPSAATPSPAASMVVDHSSD-----KAAKQTLLKVADFL 232
            +++A Q     A  S    +   A +    +  VVD+  D     +  ++    +  + 
Sbjct: 182 RLEQALQADAPAAGLSGVIAQVKQATSQLLKSEPVVDNEKDAGKLLRTLQEQARPLCAWW 241

Query: 233 AEQEFGIALSIRLRRFAVWGSITSLPDHKPDGETLLRGMQADRVKDYQDQL---RHPDLA 289
             Q      ++RL R   W  ++  PD   +  T LRG   +++K YQ++     H DL 
Sbjct: 242 LRQNATDLRALRLNRTLNWLVLSGYPDADSERVTTLRGPAPEKLKRYQERFAQGHHADLV 301

Query: 290 LWRKVEQSLTMAPYWFEGQWMSYTIAQQLGKSDWCQAIAEETQQFLRRLPSLLELKFKGG 349
           L  ++E SL  A +WF+G  M +   + L        +       L+RLP L    F  G
Sbjct: 302 L--ELEASLAGAMFWFDGLHMLWQCLEALRAEQAMIELEVTFALLLQRLPDLPSFCFHDG 359

Query: 350 EPFVSDSVKEWLA-------SVGQSQGAAGQSVGGDWQEKRKEAFQLAKEGGIAVALSML 402
            PF   + ++W+           +S      +    W+   +      ++ G+  A+  L
Sbjct: 360 IPFADAASRDWITLQVSRHLQTPESAAVVIDTEAEPWESALQAVAPRLRQDGLKAAIHEL 419

Query: 403 NDGLVSAVEPRDKFYWRLLSADLLRANHLDAMAGEQYQTLLNQVTTLSVPEWEPSLVEQI 462
             G+ +A   R +F+WRL  A L        +A  Q + L +++    +  WEP L  Q+
Sbjct: 420 KQGMYAARSERARFHWRLAQARLCVQAGKHELAKIQLEHLDHELQHTGLEHWEPELALQV 479