Pairwise Alignments

Query, 469 a.a., type VI secretion system protein TssA from Vibrio cholerae E7946 ATCC 55056

Subject, 487 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score =  178 bits (451), Expect = 4e-49
 Identities = 121/464 (26%), Positives = 224/464 (48%), Gaps = 15/464 (3%)

Query: 13  PISSSNPVGERLVDHPLFDFIEDQMMKVGSLSHASVQWDEVEHSTLKLLGEQSKDIKLLV 72
           PI  + P G   V+   +  I+ +M+K+G L  AS+ W  +E ++ + L +Q K ++++ 
Sbjct: 18  PIDPAVPAGLFDVEDETYQAIDQEMVKLGGLQEASIDWVYIEDASRQYLSQQCKHLRIVA 77

Query: 73  YLLQCLHNQVTPTRLITSFAVMSEFLNQYWNDSYPAPGPRGNLPRRKFFSQMAQRFTTVI 132
           +L           +   + A+++  L  YW  ++P PGP+G L +RK  + +  R    +
Sbjct: 78  HLSAAWLRSGCWEQWGCTLALLAGMLECYWEAAHPKPGPKGFLGKRKLVALVIDRLAEAL 137

Query: 133 EKFDFHHLDEADRQALQAAVEEWQQAVEKQGLSSEL--VESVVVRITAEIKRAEQRQQVT 190
            + D          A QAA++  QQ    Q  ++ L  +E ++ + +       +     
Sbjct: 138 PRLDRFTYTPTHAAAAQAALKRLQQQETVQLDTAALGELERLLGKYSELANGVGEAAVPK 197

Query: 191 AQSSAERETPSA---ATPSPAASMVVDHSSDKAAKQTLLKVADFLAEQEFGIALSIRLRR 247
           A ++ E+  P A   ATP    SM     +++  ++ +L +A+ + +Q+   A   +LRR
Sbjct: 198 APAATEKPAPLADVIATPVSRMSM----GNERETRRAVLSMAELINQQDPYDATGYQLRR 253

Query: 248 FAVWGSITSLPDHKPDGETLLRGMQADRVKDYQDQL--RHPDLALWRKVEQSLTMAPYWF 305
           F +W  I   P  +    T L  +  D  + Y++ +  +  D AL +++E+SLT  P+W 
Sbjct: 254 FGLWAHIQVAPQVRQGNRTELMAVPLDITRFYEEAIASKAVDPALLQRIEKSLTACPFWI 313

Query: 306 EGQWMSYTIAQQLGKSDWCQAIAEETQQFLRRLPSLLELKFKGGEPFVSDSVKEWLASVG 365
            G +++ T+A QL   +  +AI   T +F++R+PSL +L F  G  FV D    WL    
Sbjct: 314 RGSFLAATVATQLAMCEVAEAIRCATARFVQRMPSLQQLCFSDGMVFVDDQCLAWLKG-- 371

Query: 366 QSQGAAGQ-SVGGDWQEKRKEAFQLAKEGGIAVALSMLNDGLVSAVEPRDKFYWRLLSAD 424
            +QG +GQ +   ++   R+E     + GGI   L  L         PR++ +  +++AD
Sbjct: 372 -TQGPSGQGATPQEFSGLREELVSQLETGGIEPLLLRLQGLQAGVRAPRERCHTTVIAAD 430

Query: 425 LLRANHLDAMAGEQYQTLLNQVTTLSVPEWEPSLVEQIQRYTTS 468
           LL A  +  +A +    +   +   +   WEP + E++Q+Y  S
Sbjct: 431 LLAARGVSWLAQDLCANVARTMQQTTASAWEPEVFERLQQYAAS 474