Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., sigma-54 dependent transcriptional regulator from Rhodanobacter sp000427505 FW510-R12

 Score =  231 bits (590), Expect = 3e-65
 Identities = 139/351 (39%), Positives = 194/351 (55%), Gaps = 13/351 (3%)

Query: 177 ERDSAQRSLANALSRTLIGESAAMQKLREQIVSAANSQLSVMVQGETGTGKELVAAAVHE 236
           ER S   +     S  LIG+S+AMQ++R  I   A +Q  V + GE+G GKELVA  +HE
Sbjct: 124 ERRSGAAAAKTGDSSRLIGDSSAMQQVRATIAKLARNQAPVYIAGESGVGKELVARLIHE 183

Query: 237 LSSRKSAPFVAINCAAIPEHLLESELFGYCKGAFSGADSDKQGLIAQANGGTLFLDEIGD 296
              R S PFV +NC AIP  L+ESE FG+ KG+F+GA +DK+GL   A GGTLFLDE+ +
Sbjct: 184 QGPRASGPFVPVNCGAIPSELMESEFFGHRKGSFTGASTDKEGLFQAAQGGTLFLDEVAE 243

Query: 297 MPLTLQAKLLRVLESRTFRPLGGKQELSSDFRLVSATHVNLLDQVRKKEFRQDLYYRLFQ 356
           +PL +Q KLLR ++ +  RP+GG+ E+  D R++SATH NL   V + +FRQDL+YR+  
Sbjct: 244 LPLHMQVKLLRAIQEKAVRPIGGRDEIPVDARILSATHKNLGQLVEQGQFRQDLFYRINV 303

Query: 357 YPITLPRLAARLEDIELLSEHFVRVFNLQHNTRIRGLNYRAIDCLKQYDFPGNVRELKHL 416
             + +P L  R  D+  LS   ++    +    +  L+  A   L+ YDFPGNVREL+++
Sbjct: 304 IELRVPPLRERRGDVSQLSAFILKALAGKSGESVGQLSPSARGALEAYDFPGNVRELENI 363

Query: 417 IEFGCAQTADGTQVEASCFAHRLQTLPCLAPEATPVAVSVETENVDLEPSVALAGEPNFA 476
           +E   A   DG+ +EA   A  +       P   P A          +PS A A   +  
Sbjct: 364 LERAMAM-CDGSTIEA---ADLMLPQRSARPSHEPAAPG--------QPS-APAAAASTG 410

Query: 477 VIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYKCLKLEI 527
               L   +S  E   I + L     ++  AA+ LGI  R L YK  KL I
Sbjct: 411 ADGGLDDYISNLERTAIVKALEESRYNKTAAARKLGITFRALRYKLKKLGI 461