Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  222 bits (566), Expect = 2e-62
 Identities = 135/360 (37%), Positives = 208/360 (57%), Gaps = 21/360 (5%)

Query: 187 NALSRTLIGESAAMQKLREQIVSAANSQLSVMVQGETGTGKELVAAAVHELSSRKSAPFV 246
           N L R+L+G+S  +Q++R  I   + ++ +V++ GE+GTGKE+VA  +H  S R++ PFV
Sbjct: 131 NTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGPFV 190

Query: 247 AINCAAIPEHLLESELFGYCKGAFSGADSDKQGLIAQANGGTLFLDEIGDMPLTLQAKLL 306
            INC AIP  LLESELFG+ KGAF+GA + ++G    A GGTLFLDEIGDMP+++Q KLL
Sbjct: 191 PINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLL 250

Query: 307 RVLESRTFRPLGGKQELSSDFRLVSATHVNLLDQVRKKEFRQDLYYRLFQYPITLPRLAA 366
           RVL+ R F  +GG   + ++ R+++ATH NL + +  ++FR+DLYYRL  +PI +P L  
Sbjct: 251 RVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRD 310

Query: 367 RLEDIELLSEHFVRVFNLQHNTRIRGLNYRAIDCLKQYDFPGNVRELKHLIEFGCAQTAD 426
           R++DI LL +  +     +    I     RAI+ + ++D+PGNVREL +L+E       +
Sbjct: 311 RIDDIPLLLQELMTRMEAEGAQPI-CFTPRAINSMMEHDWPGNVRELANLVERMVILYPN 369

Query: 427 G-TQVEASCFAHRLQTLPCLAPEATPVAVSVETENVDLEPSVALAGEPNFAVIHD----- 480
               V      +R   +P   PE +  + SVE +  D+   +  A + NF    +     
Sbjct: 370 SLVDVNHLPTKYRYSDIPEFQPEPSRFS-SVEEQERDVLEGI-FAEDFNFEEPQEFVPDI 427

Query: 481 ------------LKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYKCLKLEIK 528
                       LK+ ++  E  +I++ L    G  A+AA  LG+ + TL  K  K  ++
Sbjct: 428 DAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMRRTTLVEKMRKYNMQ 487