Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  220 bits (560), Expect = 1e-61
 Identities = 136/340 (40%), Positives = 196/340 (57%), Gaps = 12/340 (3%)

Query: 182 QRSLANALSRTLIGESAAMQKLREQIVSAANSQLSVMVQGETGTGKELVAAAVHELSSRK 241
           QR      +  +IG S   + L+++IV  A S+ SV+++GE+GTGKELVA  +HE S R+
Sbjct: 144 QRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARGIHEASGRQ 203

Query: 242 SAPFVAINCAAIPEHLLESELFGYCKGAFSGADSDKQGLIAQANGGTLFLDEIGDMPLTL 301
             PFV INC AI   LLESELFG+  GAF+GA   ++GL   ANGGTLFLDEIG+MPLT+
Sbjct: 204 G-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDEIGEMPLTM 262

Query: 302 QAKLLRVLESRTFRPLGGKQELSSDFRLVSATHVNLLDQVRKKEFRQDLYYRLFQYPITL 361
           QA LLRVLE R  RP+G ++E++ D R+V+AT+ NL  +V    FR DLYYRL    I +
Sbjct: 263 QASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYRLNVLKIEV 322

Query: 362 PRLAARLEDIELLSEHFVRVFNLQHNTRIRGLNYRAIDCLKQYDFPGNVRELKHLIEFGC 421
             L  R +D+  L   F ++   +    +    Y  I  ++ YD+PGN+RELK+LIE  C
Sbjct: 323 SPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRELKNLIE-RC 381

Query: 422 AQTADGTQVEASCFAHRLQTLPCLAPEATPVAVSVETENVDLEPSVALAGEPNFAVIHDL 481
                      + +   L  LP  A     ++ S  +E + L  +V    +P+    +D 
Sbjct: 382 LLLGK----PPAHYWRELNGLPIYAEPEVTMSQSNNSE-ISLGDNVT---QPSLGYPND- 432

Query: 482 KQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYK 521
              +S  E   I + +    G+++ AA+ LG+ ++TL  K
Sbjct: 433 -WPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERK 471