Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  217 bits (552), Expect = 8e-61
 Identities = 126/325 (38%), Positives = 185/325 (56%), Gaps = 32/325 (9%)

Query: 193 LIGESAAMQKLREQIVSAANSQLSVMVQGETGTGKELVAAAVHELSSRKSAPFVAINCAA 252
           L+GES  +++LR+ +   A ++  V+++GE+GTGKELVA  +H  S R   PF+AINC A
Sbjct: 138 LLGESRPIRELRKLLGKLAPTESPVLIRGESGTGKELVARTLHRQSQRSEQPFIAINCGA 197

Query: 253 IPEHLLESELFGYCKGAFSGADSDKQGLIAQANGGTLFLDEIGDMPLTLQAKLLRVLESR 312
           IPEHL++SELFG+ KGAF+GA   K G I  A+GGTLFLDEIGD+PL LQA LLR L+ +
Sbjct: 198 IPEHLIQSELFGHEKGAFTGAHQRKTGRIEAADGGTLFLDEIGDLPLELQANLLRFLQEK 257

Query: 313 TFRPLGGKQELSSDFRLVSATHVNLLDQVRKKEFRQDLYYRLFQYPITLPRLAARLEDIE 372
               +GG Q +  D R+++ATHV+L   + +  FR+DLYYRL    +    L  R  D+ 
Sbjct: 258 HIERVGGSQPIPVDVRVLAATHVDLERAIEQGRFREDLYYRLNVLQVVTAPLRDRHGDLS 317

Query: 373 LLSEHFVRVFNLQHNTRIRGLNYRAIDCLKQYDFPGNVRELKHLIEFGCAQTADGTQVEA 432
           +L+ HF   ++++   R R  +  A+  + ++D+PGNVREL + +  G    A+G Q+EA
Sbjct: 318 MLANHFAHFYSVETGRRPRSFSDHALAAMGRHDWPGNVRELANRVRRGLV-LAEGRQIEA 376

Query: 433 SCFAHRLQTLPCLAPEATPVAVSVETENVDLEPSVALAGEPNFAVIHDLKQAVSQFEALI 492
                    L  L PE  P+                            L++   + E   
Sbjct: 377 QDLG-----LQLLDPEQQPLGT--------------------------LEEYKQRAERQA 405

Query: 493 ISERLNRFAGDRAKAAKSLGIPKRT 517
           + + LNR + + + AAK LGI + T
Sbjct: 406 LCDVLNRHSDNLSVAAKVLGISRPT 430