Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 501 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  219 bits (557), Expect = 2e-61
 Identities = 132/340 (38%), Positives = 193/340 (56%), Gaps = 11/340 (3%)

Query: 191 RTLIGESAAMQKLREQIVSAANSQLSVMVQGETGTGKELVAAAVHELSSRKSAPFVAINC 250
           R ++G S ++ +++ +I   A+S   V++ GE+GTGKELVA AVH+ S R   PFVA+NC
Sbjct: 165 RRIVGNSPSIGQIKSRIEKVASSMAPVLILGESGTGKELVARAVHDCSHRSVGPFVAVNC 224

Query: 251 AAIPEHLLESELFGYCKGAFSGADSDKQGLIAQANGGTLFLDEIGDMPLTLQAKLLRVLE 310
            AIPE+L+E+E FG  KGA++GA +D++G    A GGTLFLDEIGD+PL +QAKLLRV++
Sbjct: 225 GAIPENLIEAEFFGARKGAYTGATTDREGYFQAARGGTLFLDEIGDLPLAMQAKLLRVIQ 284

Query: 311 SRTFRPLGGKQELSSDFRLVSATHVNLLDQVRKKEFRQDLYYRLFQYPITLPRLAARLED 370
            R  R LGG QE + D RLVSATH +L   V+  +FRQDL+YRL    +  P L  R ED
Sbjct: 285 ERRVRALGGVQEEAVDVRLVSATHRDLNALVQSGQFRQDLFYRLNVIGLRSPALRERRED 344

Query: 371 IELLSEHFVRVFNLQHNTRIRGLNYRAIDCLKQYDFPGNVRELKHLIEFGCAQTADGTQV 430
           + LL E  +     +    +  ++ RA+  L+  + PGNVREL++L++   A  + G  +
Sbjct: 345 LPLLVEALLARLCAESGQDVPRVSERALAWLQARELPGNVRELENLLQRALA-LSSGEAL 403

Query: 431 EASCFAHRLQTLPCLAPEATPVAVSVETENVDLEPSVALAGEPNFAVIHDLKQAVSQFEA 490
           E   F           P+A   A           P   +   P   +  DL+  + + E 
Sbjct: 404 EPEDFGESDDEEIPTQPDALSPADG---------PGAPMTRPPE-EIPADLQSYLDEQER 453

Query: 491 LIISERLNRFAGDRAKAAKSLGIPKRTLAYKCLKLEIKTP 530
            ++ + L     +R  AA  LG+  R + Y+  +L I  P
Sbjct: 454 QVLLKALRECDFNRTAAAARLGLNLRQMRYRIQRLGIAMP 493