Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein (NCBI) from Escherichia coli BW25113

 Score =  226 bits (575), Expect = 2e-63
 Identities = 134/353 (37%), Positives = 202/353 (57%), Gaps = 31/353 (8%)

Query: 169 LKQSLTDIERDSAQRSLANALSRTLIGESAAMQKLREQIVSAANSQLSVMVQGETGTGKE 228
           L+++L       A+     A    ++G+S AMQ L  +I   A S+ +V++ G++GTGKE
Sbjct: 117 LEKALAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176

Query: 229 LVAAAVHELSSRKSAPFVAINCAAIPEHLLESELFGYCKGAFSGADSDKQGLIAQANGGT 288
           LVA A+H  S+R   P V +NCAA+ E LLESELFG+ KGAF+GAD  ++G   +A+GGT
Sbjct: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236

Query: 289 LFLDEIGDMPLTLQAKLLRVLESRTFRPLGGKQELSSDFRLVSATHVNLLDQVRKKEFRQ 348
           LFLDEIGD+   +Q +LLR ++ R  + +G  Q +S D RL++ATH +L  +V    FRQ
Sbjct: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296

Query: 349 DLYYRLFQYPITLPRLAARLEDIELLSEHFVRVFNLQHNTRIRGLNYRAIDCLKQYDFPG 408
           DLYYRL    I +P L  R EDI LL+ HF++ F  ++   ++G   +A+D L  YD+PG
Sbjct: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356

Query: 409 NVRELKHLIEFGCAQTADGTQVEASCFAHRLQTLPCLAPEATPVAVSVETENVDLEPSVA 468
           N+REL++ +E            E        + LP LA  +TP+ +    ++ D++P V 
Sbjct: 357 NIRELENAVERAVVLLTGEYISE--------RELP-LAIASTPIPLG---QSQDIQPLV- 403

Query: 469 LAGEPNFAVIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYK 521
                             + E  +I   L +  G++ +AA+ LGI ++TL  K
Sbjct: 404 ------------------EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAK 438