Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 670 a.a., DNA-binding transcriptional regulator HyfR from Escherichia coli ECRC62

 Score =  220 bits (560), Expect = 1e-61
 Identities = 132/336 (39%), Positives = 198/336 (58%), Gaps = 7/336 (2%)

Query: 83  AEELVFWQSNRTFSQLTSRVGMFDSVWIQPLPMDTRQVHSILLLMGESHGIVSAFENADF 142
           A++L  WQ +     L S     +SV + PL        ++LL    +   + + EN   
Sbjct: 244 ADDLFLWQRDPLLLLLASNG--CESVLLIPLTFGNHTPGALLL--AHTSSTLFSEENCQL 299

Query: 143 LKFIEVFSQQWSLLNDMEREEQRRLELKQSLTDIERDSAQRSLANALSRTLIGESAAMQK 202
           L+ I   + + ++        +   +L++SL       +++ L+N     +I +S AM+ 
Sbjct: 300 LQHI---ADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGVGDIIYQSQAMED 356

Query: 203 LREQIVSAANSQLSVMVQGETGTGKELVAAAVHELSSRKSAPFVAINCAAIPEHLLESEL 262
           L +Q+   A S  +V++ GETGTGKE++A A+H+LS R+  P V INCAAIP  LLESEL
Sbjct: 357 LLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESEL 416

Query: 263 FGYCKGAFSGADSDKQGLIAQANGGTLFLDEIGDMPLTLQAKLLRVLESRTFRPLGGKQE 322
           FG+ KGAF+GA +  +G    A+GGTLFLDEIGD+PL LQ KLLRVL+ R    LGG + 
Sbjct: 417 FGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRT 476

Query: 323 LSSDFRLVSATHVNLLDQVRKKEFRQDLYYRLFQYPITLPRLAARLEDIELLSEHFVRVF 382
           +  + R+++AT+ +L   V  ++FR DL+YRL  +P+ LP L  R EDI LL++HF +  
Sbjct: 477 IPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKM 536

Query: 383 NLQHNTRIRGLNYRAIDCLKQYDFPGNVRELKHLIE 418
               N  I  +   A+  L  +D+PGNVREL+++IE
Sbjct: 537 ARHMNRSIDAIPTEALRQLMSWDWPGNVRELENVIE 572