Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 512 a.a., sigma-54-dependent Fis family transcriptional regulator from Dickeya dianthicola ME23

 Score =  340 bits (872), Expect = 7e-98
 Identities = 209/532 (39%), Positives = 298/532 (56%), Gaps = 26/532 (4%)

Query: 1   MSQWLAFATQLVGVRKSHQLALQFVDLLTQGLDLSDSLLLLPSSDGRLLVP----HDPQR 56
           M   L+ A  L   R    L    +  L        +LL +    GR L+     H    
Sbjct: 1   MQSALSLALSLTCQRDEAGLCDWLMSTLRAAWQPQGALLGMVDVSGRQLICSGWLHRAPL 60

Query: 57  QFAWSVTDFDVPFAHVLQSSNAMHLTAEELVFWQSNRTFSQLTSRVGMFDSVWIQPLPMD 116
             +  V DF  P A+VL  +     T+        +  F Q+ +  G    ++  PL  D
Sbjct: 61  SLSLGVDDFSHPLAYVLLKNQTRRWTSLYGGARIEHGAFRQVLTDAGAACGLYAMPLQAD 120

Query: 117 TRQVHSILLLMGESHGIVSAFENADFLKFIEVFSQQWSLLNDMEREEQRRLELKQSLTDI 176
           + +  ++L L+     + +  ++ D  +  +VF +Q +L+ D+    + +  L+ SL  +
Sbjct: 121 SGKPLAVLALLDTPERLQALEQHGDCAQLAQVFCRQLALIRDLGHSRREQTALRDSLRQM 180

Query: 177 ERDSA-QRSLANALSRTLIGESAAMQKLREQIVSAANSQLSVMVQGETGTGKELVAAAVH 235
           + D A +R   N ++  LIG+S  +++L +QI  AA+ +L+V++ GETG GKE+VA  +H
Sbjct: 181 KDDGALRRERENRVAAGLIGQSGVVRQLHQQICQAASHRLAVLIHGETGAGKEVVAGLLH 240

Query: 236 ELSSRKSAPFVAINCAAIPEHLLESELFGYCKGAFSGADSDKQGLIAQANGGTLFLDEIG 295
           + S R   PF+AINCAAIPE+L+ESELFGY KGAFSGA S+K GL+AQANGGTLFLDE+G
Sbjct: 241 QCSDRAERPFIAINCAAIPENLIESELFGYEKGAFSGAQSNKVGLVAQANGGTLFLDEVG 300

Query: 296 DMPLTLQAKLLRVLESRTFRPLGGKQELSSDFRLVSATHVNLLDQVRKKEFRQDLYYRLF 355
           DMP  +QAKLLRVLE+  FRPLG  QE  SDFRL++ATH  L  +V + +FRQDLY+RL 
Sbjct: 301 DMPPPMQAKLLRVLETHRFRPLGAGQESHSDFRLIAATHQPLEQRVAEGQFRQDLYHRLC 360

Query: 356 QYPITLPRLAARLEDIELLSEHFVRVFNLQHNTRIRGLNYRAIDCLKQYDFPGNVRELKH 415
           Q  + +  L  R +DI LL EHF+  F  Q   +   L+   +  L  YDFPGNVRELK+
Sbjct: 361 QCLVQVAPLRDRPDDISLLCEHFITQFAQQQQKQPGSLHRAFLRQLVGYDFPGNVRELKN 420

Query: 416 LIEFGCAQTADGTQVEASCFAHRLQTLPCLAPEATPVAVSVETENVDLEPSVALAGEPNF 475
           L+E  CA T  G  +       RL++LP    E      + +++               F
Sbjct: 421 LLEVACAHTPAGEPI-------RLESLPPELHERLCNGTAADSD--------------AF 459

Query: 476 AVIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYKCLKLEI 527
             I DL+ A  Q+EA +I+ RL +F G+R   A+SL IPKRTL +KC KLE+
Sbjct: 460 EHIQDLRIATQQYEAAVIAARLRQFQGNRLLVAESLNIPKRTLDHKCQKLEV 511