Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., response regulator regulating glmY sRNA in two-component system with sensor protein GlrK from Escherichia coli BL21

 Score =  221 bits (562), Expect = 6e-62
 Identities = 137/359 (38%), Positives = 198/359 (55%), Gaps = 45/359 (12%)

Query: 176 IERDSAQRSLANALSRT-----------LIGESAAMQKLREQIVSAANSQLSVMVQGETG 224
           +++D+  +++ +AL ++           ++  S  M +L EQ    A S +SV++ G++G
Sbjct: 108 VDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 167

Query: 225 TGKELVAAAVHELSSRKSAPFVAINCAAIPEHLLESELFGYCKGAFSGADSDKQGLIAQA 284
           TGKE+ A A+H  S R S PF+AINC A+PE LLESELFG+ +GAF+GA S+++GL   A
Sbjct: 168 TGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA 227

Query: 285 NGGTLFLDEIGDMPLTLQAKLLRVLESRTFRPLGGKQELSSDFRLVSATHVNLLDQVRKK 344
            GGTLFLDEIGDMP  LQ KLLRVL+ R  RPLG  +++  + R++SATH +L   + + 
Sbjct: 228 EGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARG 287

Query: 345 EFRQDLYYRLFQYPITLPRLAARLEDIELLSEHFVRVFNLQHNTRIRGLNYRAIDCLKQY 404
           EFR+DLYYRL    + +P LA R EDI LL+ H +R    +H   +R  +  A+  L   
Sbjct: 288 EFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347

Query: 405 DFPGNVRELKHLIEFGCAQTADGTQVEASCFAHRLQTLPCLAPEATPVAVSVETENVDLE 464
            +PGNVR+L ++IE                         C+A  ++PV      E     
Sbjct: 348 SWPGNVRQLVNVIE------------------------QCVALTSSPVISDALVEQ---- 379

Query: 465 PSVALAGEPNFAVIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYKCL 523
              AL GE     +    +A +QFE   + + L    G+   AA+  G   RT  YK L
Sbjct: 380 ---ALEGEN--TALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAG-RNRTEFYKLL 432