Pairwise Alignments

Query, 869 a.a., type VI secretion system ATPase TssH from Vibrio cholerae E7946 ATCC 55056

Subject, 873 a.a., Chaperone protein ClpB (ATP-dependent unfoldase) from Variovorax sp. SCN45

 Score =  494 bits (1273), Expect = e-144
 Identities = 319/861 (37%), Positives = 485/861 (56%), Gaps = 56/861 (6%)

Query: 12  KLNAQSKLALEQAASLCIERQHPEVTLEYYLDVLL---DNPLSDVRLVLKQAGLEVDQVK 68
           KL  + + AL  A SL +   +  +   + L  +L   D P    R +L++AG+ V  + 
Sbjct: 5   KLTTKFQEALGDAQSLALGNDNAYIEPAHLLAAMLRQDDGP----RALLERAGVNVPGLT 60

Query: 69  QAIASTYSREQVLDTYPAFS--PLLVELLQEAWLLSSTELEQAELR----SGAIFLAALT 122
           QA  +   +   +  +      P L +LLQ      +TE E  +      +G +FL AL 
Sbjct: 61  QAAEAAIKKLPQVQGHDIVQVGPELGKLLQ------ATEKEAIKRNDQFIAGELFLLAL- 113

Query: 123 RADRYLSFKLISLFEGINRENLKKHFAMILS-DSAETAVAKTDKNAANPLQAAAETPLGR 181
            AD        +   G++R++L+     +       +A A+  + A           L +
Sbjct: 114 -ADSKADIGKTAKENGLSRKSLEAAIDAVRGGQGVNSADAEGQREA-----------LKK 161

Query: 182 FCTNVTEQARNGELDPVLSRENELNLMVDILCRRRKNNPIVVGEAGVGKSAMIEGLALRV 241
           +C ++TE+AR G+LDPV+ R+ E+   + +L RR KNNP+++GE GVGK+A++EGLA R+
Sbjct: 162 YCMDLTERARLGKLDPVIGRDEEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 221

Query: 242 VAGKVPTQLQNVELYSLDLGRLQAGASVKGEFEKRLKGVIDAIKQSPKPIILFIDEAHTL 301
           VAG+VP  L+   + SLD+  L AGA  +GEFE+RLK V++ + +     I+FIDE HT+
Sbjct: 222 VAGEVPDSLKGKRVLSLDMAALLAGAKFRGEFEERLKTVLNELAKDEGQTIVFIDELHTM 281

Query: 302 IGSGNQEGGSDAANLLKPALARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLDEPTI 361
           +G+G  EG  DA N+LKPALARGEL  V ATT  EY+KY EKD AL RRFQ + + EP++
Sbjct: 282 VGAGKAEGAMDAGNMLKPALARGELHCVGATTLDEYRKYIEKDAALERRFQKIIVGEPSV 341

Query: 362 DQAVDILRGLNSVYEKAHNVLITDDALKAAAELSARYISGRQLPDKAIDVLDTACARIAI 421
           +  + ILRGL   YE  H V ITD A+ AAAELS RYI+ R LPDKAID++D A A+I I
Sbjct: 342 EATIAILRGLQEKYEVHHGVQITDPAIVAAAELSDRYITDRFLPDKAIDLIDEAAAKIKI 401

Query: 422 NMTTPPKRLALLETLCHQRQLEIDMLERAQFLGQEVDSERLDVLRNQELADEAEKAALTQ 481
            M + P+ +  L+    Q Q+E + + R +    E   +RL ++ ++ +  + E A   +
Sbjct: 402 EMDSKPEVMDRLDRRLIQLQIEREAVRREK---DEASQKRLGLIEDEIVKLQKEIADYDE 458

Query: 482 SWQQQKSLVESIIALRAELMEL-------------SQAQEQDPDHLLVVRTALQ--EQYQ 526
            WQ +K+  +    +R ++ ++             ++  E     L  +   L+  E  +
Sbjct: 459 IWQAEKAQAQGSAQVREDVDKIKFQIEEWKRKGDFNKVAELQYGQLPALEKRLKEAEASE 518

Query: 527 ALDAIDHAERLMHPQVDADQIAEVIADWTGVPVDQMNTDELHKITHLTSILGQAIKGQET 586
           A      A  L+  QV +++IAEV+A  TG+PV ++   E  K+  +   L + + GQ+ 
Sbjct: 519 ASKGKSSAPTLLRTQVGSEEIAEVVARATGIPVAKLMQGERDKLLVMEDKLHERVVGQDE 578

Query: 587 AIERIHRHLLTARADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQFLTTINMS 646
           AI  +   +  +R+ L  P RP G+FL +GP+GVGKTE    LA  L+  +  L  I+MS
Sbjct: 579 AIGAVANAIRRSRSGLSDPNRPTGSFLFLGPTGVGKTELCKALAGFLFDSEDHLIRIDMS 638

Query: 647 EYQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQGFD 706
           E+ EKH+V+RLIG+PPGYVGY EGG LTEA+R+ PYSVVLLDEVEKAHP+V N+  Q  D
Sbjct: 639 EFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVVLLDEVEKAHPDVFNVLLQVLD 698

Query: 707 KGEIADGEGRVIDCQNIVFFLTSNLGYQTIVDYADEPA-KLDEALYPELAAFFKPALLAR 765
            G + DG+GR +D +N V  +TSN+G   I     +P+ ++ EA++ EL  +F+P  L R
Sbjct: 699 DGRLTDGQGRTVDFKNTVIVMTSNIGSPIIQAMVGKPSEEIKEAVWDELKNYFRPEFLNR 758

Query: 766 M-EVIPYLPLGKEVLAQIVRGKLARLE-KLFKTRYNAEVVIEESLIDEILSRATRSENGA 823
           + E + +  L  + +  I   +L  L+ +L K     EV    + + EI         GA
Sbjct: 759 IDETVVFHALDAKNIESIAAIQLKVLQARLAKMDLGLEV--SPAALAEIAKVGFDPVFGA 816

Query: 824 RMLEAIIEGQLLPPVSLALLN 844
           R L+  I+ ++  P+S  LL+
Sbjct: 817 RPLKRAIQQRIENPLSKLLLD 837