Pairwise Alignments

Query, 869 a.a., type VI secretion system ATPase TssH from Vibrio cholerae E7946 ATCC 55056

Subject, 861 a.a., ATP-dependent chaperone ClpB from Erwinia tracheiphila SCR3

 Score =  496 bits (1278), Expect = e-144
 Identities = 313/878 (35%), Positives = 479/878 (54%), Gaps = 62/878 (7%)

Query: 12  KLNAQSKLALEQAASLCIERQHPEVTLEYYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAI 71
           +L  + +LAL  A SL +   +  +   + +  LL      V  +L  AG++V  +   I
Sbjct: 9   RLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLSQEGGSVGPLLTTAGIDVTSLANNI 68

Query: 72  ASTYSREQVL-----DTYPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRADR 126
               +R   +     D  P+   + V  L + +                    A  R D 
Sbjct: 69  HQAITRLPRVEGSDGDVQPSSDLIRVLNLCDKF--------------------AQKRGDN 108

Query: 127 YLSFKLISLFEGINRENLKKHFAMILSDSAETAVAKTD-KNAANPLQAAAETP---LGRF 182
           ++S +L  L    +R +L     +  + S + A A    +   N     AE     L ++
Sbjct: 109 FISSELFVLAALDSRGSLADLLKLAGATSEKLARAVEQIRGGENVNDQGAEDQRHALKKY 168

Query: 183 CTNVTEQARNGELDPVLSRENELNLMVDILCRRRKNNPIVVGEAGVGKSAMIEGLALRVV 242
             ++TE+A  G+LDPV+ R+ E+   + +L RR KNNP+++GE GVGK+A++EGLA R++
Sbjct: 169 TIDLTERAEKGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 228

Query: 243 AGKVPTQLQNVELYSLDLGRLQAGASVKGEFEKRLKGVIDAIKQSPKPIILFIDEAHTLI 302
            G+VP  L+   + +LD+G L AGA  +GEFE+RLKGV++ + +    +ILFIDE HT++
Sbjct: 229 NGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLSKQEGNVILFIDELHTMV 288

Query: 303 GSGNQEGGSDAANLLKPALARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLDEPTID 362
           G+G  +G  DA N+LKPALARGEL  V ATT  EY++Y EKD AL RRFQ V + EP+++
Sbjct: 289 GAGKVDGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVE 348

Query: 363 QAVDILRGLNSVYEKAHNVLITDDALKAAAELSARYISGRQLPDKAIDVLDTACARIAIN 422
             + ILRGL   YE  H+V ITD A+ AAA LS RYI+ RQLPDKAID++D A + I + 
Sbjct: 349 DTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQ 408

Query: 423 MTTPPKRLALLETLCHQRQLEIDMLERAQFLGQEVDSERLDVLRNQELADEAEKAALTQS 482
           + + P+ L  LE    Q +LE   L++      +   +RLD+L ++    E + + L + 
Sbjct: 409 IDSKPESLDRLERRIIQLKLEQQALKKE---SDDASIKRLDMLEDELTRKERDYSELEEE 465

Query: 483 WQQQKSLVESIIALRAELMELSQAQEQD-----------------PDHLLVVRTALQEQY 525
           W+ +K+ +     ++AEL +     EQ                  PD    + +A Q + 
Sbjct: 466 WKAEKASLSGTQTIKAELEQAKLLLEQARRSGDLAQMSELQYGKIPDLEKQLASATQSEG 525

Query: 526 QALDAIDHAERLMHPQVDADQIAEVIADWTGVPVDQMNTDELHKITHLTSILGQAIKGQE 585
           + +       RL+   V   +IA+V+A WTG+PVD+M   E  K+  +   L   + GQ+
Sbjct: 526 KTM-------RLLRNCVTDIEIADVLARWTGIPVDRMMEGERDKLLRMEQELHSRVIGQD 578

Query: 586 TAIERIHRHLLTARADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQFLTTINM 645
            A+E +   +  +RA L  P RP G+FL +GP+GVGKTE    LA  ++     +  ++M
Sbjct: 579 EAVEAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALAHFMFDSDDAMVRLDM 638

Query: 646 SEYQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQGF 705
           SE+ EKH VSRLIG+PPGY+GY EGG LTEA+R+ PYSV+LLDEVEKAHP+V NI  Q  
Sbjct: 639 SEFMEKHAVSRLIGAPPGYIGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL 698

Query: 706 DKGEIADGEGRVIDCQNIVFFLTSNLGYQTIVDYADE--PAKLDEALYPELAAFFKPALL 763
           D G + DG+GR +D +N V  +TSNLG   I +  D     ++ + +   +   F+P  +
Sbjct: 699 DDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFDALGYGEMKDVVMNVVTHHFRPEFI 758

Query: 764 ARM-EVIPYLPLGKEVLAQIVRGKLARLEKLFKTRYNAEVVIEESLIDEILSRATRSENG 822
            R+ EV+ + PLG++ +A I R +L RL K    R   E+ I +  +  +         G
Sbjct: 759 NRIDEVVVFHPLGEKHIASIARIQLQRLYKRLNER-GYELYISDKALHMLAENGYDPVYG 817

Query: 823 ARMLEAIIEGQLLPPVSLALLNKLAERAPVERIRLAAE 860
           AR L+  I+  +  P++  +L+      P ++I +  E
Sbjct: 818 ARPLKRAIQQHIENPLAQQILS--GSLVPGKKIEMDVE 853