Pairwise Alignments

Query, 869 a.a., type VI secretion system ATPase TssH from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., ATP-dependent chaperone ClpB from Escherichia coli ECRC62

 Score =  506 bits (1304), Expect = e-147
 Identities = 329/876 (37%), Positives = 491/876 (56%), Gaps = 64/876 (7%)

Query: 12  KLNAQSKLALEQAASLCIERQHPEVTLEYYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAI 71
           +L  + +LAL  A SL +   +  +   + +  LL+     V  +L  AG+   Q++  I
Sbjct: 5   RLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDI 64

Query: 72  ASTYSR-EQVLDTYPAFSPL--LVELLQEAWLLSSTELEQAELRSGAIFLAALTRADRYL 128
               +R  QV  T     P   LV +L     L                  A  R D ++
Sbjct: 65  NQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKL------------------AQKRGDNFI 106

Query: 129 SFKLISLFEGINRENLKKHFAMILSDSAETAVAKT-------------DKNAANPLQAAA 175
           S +L  L    +R  L    A IL  +  T    T             D+ A +  QA  
Sbjct: 107 SSELFVLAALESRGTL----ADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQA-- 160

Query: 176 ETPLGRFCTNVTEQARNGELDPVLSRENELNLMVDILCRRRKNNPIVVGEAGVGKSAMIE 235
              L ++  ++TE+A  G+LDPV+ R+ E+   + +L RR KNNP+++GE GVGK+A++E
Sbjct: 161 ---LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 217

Query: 236 GLALRVVAGKVPTQLQNVELYSLDLGRLQAGASVKGEFEKRLKGVIDAIKQSPKPIILFI 295
           GLA R++ G+VP  L+   + +LD+G L AGA  +GEFE+RLKGV++ + +    +ILFI
Sbjct: 218 GLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFI 277

Query: 296 DEAHTLIGSGNQEGGSDAANLLKPALARGELSTVAATTWKEYKKYFEKDPALTRRFQLVK 355
           DE HT++G+G  +G  DA N+LKPALARGEL  V ATT  EY++Y EKD AL RRFQ V 
Sbjct: 278 DELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVF 337

Query: 356 LDEPTIDQAVDILRGLNSVYEKAHNVLITDDALKAAAELSARYISGRQLPDKAIDVLDTA 415
           + EP+++  + ILRGL   YE  H+V ITD A+ AAA LS RYI+ RQLPDKAID++D A
Sbjct: 338 VAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEA 397

Query: 416 CARIAINMTTPPKRLALLETLCHQRQLEIDMLERAQFLGQEVDSERLDVLRNQELAD-EA 474
            + I + + + P+ L  L+    Q +LE   L +      E   +RLD+L N+EL+D E 
Sbjct: 398 ASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKE---SDEASKKRLDML-NEELSDKER 453

Query: 475 EKAALTQSWQQQKSLVESIIALRAELMELSQAQEQDPDHLLVVRTA---------LQEQY 525
           + + L + W+ +K+ +     ++AEL +   A EQ      + R +         L++Q 
Sbjct: 454 QYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQL 513

Query: 526 QALDAID-HAERLMHPQVDADQIAEVIADWTGVPVDQMNTDELHKITHLTSILGQAIKGQ 584
           +A   ++    RL+  +V   +IAEV+A WTG+PV +M   E  K+  +   L   + GQ
Sbjct: 514 EAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQ 573

Query: 585 ETAIERIHRHLLTARADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQFLTTIN 644
             A++ +   +  +RA L  P RP G+FL +GP+GVGKTE    LA  ++   + +  I+
Sbjct: 574 NEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRID 633

Query: 645 MSEYQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQG 704
           MSE+ EKH+VSRL+G+PPGYVGY EGG LTEA+R+ PYSV+LLDEVEKAHP+V NI  Q 
Sbjct: 634 MSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQV 693

Query: 705 FDKGEIADGEGRVIDCQNIVFFLTSNLGYQTIVDYADE--PAKLDEALYPELAAFFKPAL 762
            D G + DG+GR +D +N V  +TSNLG   I +   E   A + E +   ++  F+P  
Sbjct: 694 LDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEF 753

Query: 763 LARM-EVIPYLPLGKEVLAQIVRGKLARLEKLFKTRYNAEVVIEESLIDEILSRATRSEN 821
           + R+ EV+ + PLG++ +A I + +L RL K  + R   E+ I +  +  +         
Sbjct: 754 INRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEER-GYEIHISDEALKLLSENGYDPVY 812

Query: 822 GARMLEAIIEGQLLPPVSLALLNKLAERAPVERIRL 857
           GAR L+  I+ Q+  P++  +L+   E  P + IRL
Sbjct: 813 GARPLKRAIQQQIENPLAQQILS--GELVPGKVIRL 846