Pairwise Alignments

Query, 257 a.a., type IV secretion protein DotU from Vibrio cholerae E7946 ATCC 55056

Subject, 291 a.a., putative type 4/6 secretion system from Pseudomonas putida KT2440

 Score =  192 bits (488), Expect = 7e-54
 Identities = 97/229 (42%), Positives = 141/229 (61%)

Query: 29  FQLRGDNPNVLIDAATPLFGLSLRVRTLTECDNIEQIYRQTIEEIKAIEIELTEQGYEHA 88
           FQLRG   N+++DAA PLFGL +R+RTL E  NI+ +++Q   +I +I  E+ + GYE A
Sbjct: 61  FQLRGGCANLMLDAAAPLFGLVMRLRTLDELPNIKDVHQQVRIQIDSIREEIRQHGYEPA 120

Query: 89  ILMAYRYILCAFLDESVMGTEWGASSLWAEHSMLSRFHNETWGGEKVFTILSRLEGEPHR 148
            L+AY Y LC ++DE+VM   WG SS W+   +LS FH+ETWGGEK+FT+++RL  EP R
Sbjct: 121 QLLAYSYGLCLYIDEAVMERPWGKSSCWSHEPLLSIFHDETWGGEKIFTVITRLMQEPKR 180

Query: 149 YQALLAFIYHCLILGFEGKYRVMEGGQAEREKVISRLHQLLSSLEESEPQDLTRPTDHVV 208
           YQ +L F+Y  L LG +GKY +   G+     +I +LH ++  L    P+++  P  +V 
Sbjct: 181 YQDVLEFMYFALCLGLKGKYALAPKGEETLNALIHQLHGIIRELRGPTPEEVCDPYTNVA 240

Query: 209 RAKYTLSRQMPVWSVFAGFIVLWVGLFLGYSYVLHSKSSDVLNQLNQIL 257
              + +SR  P WS      +     +  YSY LH  +++VL  LN IL
Sbjct: 241 PRNFRMSRIWPWWSPLVISAIAMAVAYGIYSYRLHLITTEVLESLNGIL 289