Pairwise Alignments

Query, 257 a.a., type IV secretion protein DotU from Vibrio cholerae E7946 ATCC 55056

Subject, 282 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score =  163 bits (413), Expect = 3e-45
 Identities = 85/230 (36%), Positives = 131/230 (56%), Gaps = 1/230 (0%)

Query: 29  FQLRGDNPNVLIDAATPLFGLSLRVRTLTECDNIEQIYRQTIEEIKAIEIELTEQGYEHA 88
           FQLRG   N+++DAA+ LFGL +R+RTL +  NI+ +++    +I  I  E+ + GY   
Sbjct: 51  FQLRGGYDNLMLDAASQLFGLVIRLRTLDDLPNIQFVHKTVQTQIGTIREEMRQHGYCAV 110

Query: 89  ILMAYRYILCAFLDESVMGTEWGASSLWAEHSMLSRFHNETWGGEKVFTILSRLEGEPHR 148
               Y Y LC  LDE+VM   WG +S W+   +LS FH+ET GGEK+F +L R+   P  
Sbjct: 111 HQEVYSYALCLHLDEAVMTRPWGQNSCWSHEPLLSIFHDETQGGEKIFVLLERIMQSPKE 170

Query: 149 YQALLAFIYHCLILGFEGKYRVMEGGQAEREKVISRLHQLLSSLEESEPQDLTRPTDHVV 208
           +Q +L F+Y C  LG +GKY +   G      +ISR+H+++  L    P+ ++ P  +VV
Sbjct: 171 FQDVLEFLYFCFCLGLQGKYALDPKGDEILRALISRMHKVIRQLRGPTPETVSDPYSNVV 230

Query: 209 RAKYTLSR-QMPVWSVFAGFIVLWVGLFLGYSYVLHSKSSDVLNQLNQIL 257
              + + R Q P W+     ++  V  +  YSY L   +++V+  LN IL
Sbjct: 231 HCPHRMRRWQWPWWTPLVISVIAMVCAYSYYSYRLDLLTAEVVESLNAIL 280