Pairwise Alignments

Query, 257 a.a., type IV secretion protein DotU from Vibrio cholerae E7946 ATCC 55056

Subject, 238 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score = 51.2 bits (121), Expect = 2e-11
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 7/225 (3%)

Query: 34  DNPNVLIDAATPLFGLSLRVRTLTECDNIEQIYRQTIEEIKA-IEIELTEQGYEHAILMA 92
           D P  L D       ++L VR   +  ++ Q +  ++E   A +E +     Y    +  
Sbjct: 16  DKPT-LKDLVQDFISMALIVRRGRQVTSV-QAFEGSVERFFANLERDARAANYSVEQVKD 73

Query: 93  YRYILCAFLDESVMGTEWGASSLWAEHSMLS-RFHNETWGGEKVFTILSRLEGEPHRYQA 151
            +Y LCAFLDESV+ ++  A     E   L  R+      GE  F  +  L  +  +   
Sbjct: 74  TQYALCAFLDESVLRSDDNALRRHFELQPLQFRYFGVHLAGEGFFEKVDALRADVKQNID 133

Query: 152 LLAFIYHCLILGFEGKYRVMEGGQAEREKVISRLHQLLSSLEESEPQDLTRPTDHVVRAK 211
           +L   + CL LGFEGK+ +   GQ ++ + ++       +     P+ L+       +  
Sbjct: 134 VLEVYHLCLALGFEGKFSL---GQKDQLRYLANTLGQDIARYRKAPKALSPDWALPDQVS 190

Query: 212 YTLSRQMPVWSVFAGFIVLWVGLFLGYSYVLHSKSSDVLNQLNQI 256
             L  ++P+W   A   ++ V ++L   ++L    + +  Q+ Q+
Sbjct: 191 QMLRHEVPLWVYLALIALVCVAVYLTLDWLLGKDVAALSEQIRQL 235