Pairwise Alignments

Query, 257 a.a., type IV secretion protein DotU from Vibrio cholerae E7946 ATCC 55056

Subject, 289 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score =  199 bits (505), Expect = 7e-56
 Identities = 99/229 (43%), Positives = 144/229 (62%)

Query: 29  FQLRGDNPNVLIDAATPLFGLSLRVRTLTECDNIEQIYRQTIEEIKAIEIELTEQGYEHA 88
           FQLRG   N+++DAA+PLFGL +R+RTL E  NI+ +++Q   +I  I+ E+ + GYE A
Sbjct: 59  FQLRGGFANLMLDAASPLFGLVIRLRTLDELPNIQDVHQQVRSQIDNIQEEMRQHGYEPA 118

Query: 89  ILMAYRYILCAFLDESVMGTEWGASSLWAEHSMLSRFHNETWGGEKVFTILSRLEGEPHR 148
            L+AY Y LC F+DE+VM   WG SS W++  +LS FH+ETWGGEK+FT+++RL  EP R
Sbjct: 119 QLLAYSYGLCLFIDEAVMERPWGKSSCWSQEPLLSIFHDETWGGEKIFTVITRLMQEPKR 178

Query: 149 YQALLAFIYHCLILGFEGKYRVMEGGQAEREKVISRLHQLLSSLEESEPQDLTRPTDHVV 208
           YQ +L F+Y  L LG +GKY +   G+     +I +LH ++  L    P+++  P  +V 
Sbjct: 179 YQDVLEFMYFALCLGLKGKYALAPKGEETLNALIHQLHGIIRELRGPTPEEVCDPYTNVA 238

Query: 209 RAKYTLSRQMPVWSVFAGFIVLWVGLFLGYSYVLHSKSSDVLNQLNQIL 257
              + +SRQ P WS      +     +  YSY LH  +++VL  LN IL
Sbjct: 239 PRNFRMSRQWPWWSPLVISAIAMAVAYGIYSYRLHLITTEVLESLNGIL 287