Pairwise Alignments

Query, 257 a.a., type IV secretion protein DotU from Vibrio cholerae E7946 ATCC 55056

Subject, 412 a.a., type VI secretion system peptidoglycan-associated domain from Enterobacter asburiae PDN3

 Score =  139 bits (349), Expect = 1e-37
 Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 8/223 (3%)

Query: 37  NVLIDAATPLFGLSLRVRTLTECDNIEQIYRQTIEEIKAIEIELTEQGYEHAILMAYRYI 96
           N L+ AA PL     ++R     D+   + ++ I+EI+  E+   + G  + +++  RY 
Sbjct: 20  NQLVAAANPLLNAIPQIRHSVSHDDQVALRQRLIDEIRRFEVRCQQAGLPYEVIVGARYC 79

Query: 97  LCAFLDESVMGTEWGASSLWAEHSMLSRFHNETWGGEKVFTILSRLEGEPHRYQALLAFI 156
           LC  LDE+   T WG+S +W+ + +L  FHNETWGGEK F +L+RL   P  +  LL  I
Sbjct: 80  LCTALDEAAALTPWGSSGVWSSNGLLVTFHNETWGGEKFFQLLARLSQNPREHILLLEMI 139

Query: 157 YHCLILGFEGKYRVMEGGQAEREKVISRLHQLLSSLEESEPQDLT-RPTDHVVRAKYTLS 215
            +CL+LGFEG+YRV++ G+ + E +  RL Q++  +  S P  L+  P D  V  K  L 
Sbjct: 140 NYCLLLGFEGRYRVLDNGRTQLETIKQRLWQMIRGVRGSYPPPLSPHPEDRPVLRK--LW 197

Query: 216 RQM-PVWS--VFAGFIVLWVGLFLGYSYVLHSKSSDVLNQLNQ 255
           R M P+W+    AGFI     + L +   L   ++ VL ++ Q
Sbjct: 198 RPMVPLWACVALAGFIACLFYIVLNWR--LGDNTNPVLAKIYQ 238