Pairwise Alignments

Query, 257 a.a., type IV secretion protein DotU from Vibrio cholerae E7946 ATCC 55056

Subject, 258 a.a., DotU family type IV/VI secretion system protein from Dickeya dianthicola ME23

 Score =  239 bits (609), Expect = 5e-68
 Identities = 116/256 (45%), Positives = 171/256 (66%), Gaps = 9/256 (3%)

Query: 6   KETPLASLLFDDVEKINHDQDYWFQLRGDNPNVLIDAATPLFGLSLRVRTLTECDNIEQI 65
           K   L  LL+D+  +++ D DYWF+LRG + N +IDA TPL G+  RVR L+E D + ++
Sbjct: 7   KSDQLGDLLYDNARQLDMDSDYWFRLRGHSINPMIDAVTPLLGMVERVRQLSEYDGVAEL 66

Query: 66  YRQTIEEIKAIEIELTEQGYEHAILMAYRYILCAFLDESVMGTEWGASSLWAEHSMLSRF 125
           Y++   EI+AIE EL   GYE+ +++++RYILC F+DE+VMG EWG  S+W+ HS+L+RF
Sbjct: 67  YQRVQSEIQAIEQELHAHGYENGVILSFRYILCTFIDEAVMGREWGGQSVWSAHSLLTRF 126

Query: 126 HNETWGGEKVFTILSRLEGEPHRYQALLAFIYHCLILGFEGKYRVMEGGQAEREKVISRL 185
           HNETWGGEKVF +L +L  +P RY+ +L FIY CL LGFEG+YRVM  G+ E ++V+ RL
Sbjct: 127 HNETWGGEKVFVLLEKLLDDPARYRDILEFIYLCLCLGFEGRYRVMTQGREELDRVVRRL 186

Query: 186 HQLLSSLEESEPQ----DLTRPTDHVVRAKYTLSRQMPVWSVFAGFIVLWVGLFLGYSYV 241
           H  L    E+ P     +L +P+     ++Y L +Q+ + ++  G  V+    F  Y Y 
Sbjct: 187 HDTLRPEPENSPTVFHLNLGQPS-----SRYHLRKQISLRTLLVGLCVVMAAAFGLYRYQ 241

Query: 242 LHSKSSDVLNQLNQIL 257
           L +++ DVL QL ++L
Sbjct: 242 LTNQTQDVLRQLGELL 257