Pairwise Alignments

Query, 444 a.a., type VI secretion system baseplate subunit TssK from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., type VI secretion protein from Pseudomonas simiae WCS417

 Score =  372 bits (956), Expect = e-107
 Identities = 197/440 (44%), Positives = 285/440 (64%), Gaps = 2/440 (0%)

Query: 5   NRVIWNEGLFIKPQHFQQQQRYTEYCLDERLSTVSRYLYGISELSLNPEYLSFGRIAIER 64
           NRV+W+EG+FI  QHFQQ  RY E  +D R   +S   +G SEL ++   L+ G++AI  
Sbjct: 5   NRVVWSEGMFIGTQHFQQHDRYLENLIDARSRPLSAGSWGFSELLIDQGLLAQGKLAIVS 64

Query: 65  AVGVMPDGTTFRIPQEDHLPDALEVTDASLANQIVYLAVPLRSESLME-INWPEERGTGR 123
           A G++PDGT F IPQ+D  P  L + D +L + +VYLA+PL+     + ++  E     R
Sbjct: 65  ARGLLPDGTPFNIPQDDLAPSPLNIDD-NLRDGLVYLALPLKRAGARDTVDEGEALEAAR 123

Query: 124 YVSRRLEVRDVHSVQGDTTTIDVSPVRLQLMLEREDRSAYASIAIGRILEKRPDGSVVLD 183
           YVS+  EVRD ++   +   + V    L+L+  ++  S YA+I + RI EKR D ++VLD
Sbjct: 124 YVSQVREVRDDNAPFENRAPVAVGARALRLLTAQDGISDYAAIGLVRIKEKRADRALVLD 183

Query: 184 PDFIPCHLNVVGISALHRFINEMSGLMRERAKNIAQRISSPAQGGVADVSDFMLLQALNR 243
             +IP  L+V     L  F +E+ GL+ +R + +A R+ +   GG ++++DFMLLQ +NR
Sbjct: 184 DTYIPPVLDVAASKPLTAFRSELLGLLHQRGEALAGRVVASGAGGASEIADFMLLQLVNR 243

Query: 244 LQPQMKHLAELRSLHPERLFECLSCVCGELATFTDESRLPPSLPSYNHDSPSHSFQPLIR 303
            QP ++HL++L  LHPER F  L  + GE +TF+   R P   P Y HD  + SF P++ 
Sbjct: 244 AQPLIQHLSQLSPLHPERFFSELVSLAGEFSTFSTSGRRPQEYPQYQHDDLALSFAPVMA 303

Query: 304 SLRQSLSVVLEPRAVSIQLDKRKYGLMVAPIHDPQLMESAEFIIAVKARMPLDELRRLFT 363
           +LR++LS++++ +A  I + ++ YG+ VA + D  L++SA FI+ V+A +P + LR  F 
Sbjct: 304 ALREALSMLIDSKATPIPIVEKAYGVHVAMLADKTLLDSASFILVVRADVPGETLRARFG 363

Query: 364 QQTKVASVEKIRELISLQLPGIPLTPLPVAPRQLPYHAGYTYYQLDKTSAAWAMLTHSSG 423
           QQ+KV SVE IR+L++LQLPGI L PLPVAPRQLPYHAG TYY+LD+ S AW  L +S G
Sbjct: 364 QQSKVGSVEHIRDLVNLQLPGITLLPLPVAPRQLPYHAGSTYYELDRGSEAWQQLGNSGG 423

Query: 424 FAFHVAAAFDDLELQFWAIR 443
           FAFH+A  F  L L FWAIR
Sbjct: 424 FAFHIAGQFPGLNLAFWAIR 443