Pairwise Alignments

Query, 444 a.a., type VI secretion system baseplate subunit TssK from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., type VI secretion protein from Pseudomonas simiae WCS417

 Score =  277 bits (708), Expect = 6e-79
 Identities = 159/442 (35%), Positives = 245/442 (55%), Gaps = 5/442 (1%)

Query: 5   NRVIWNEGLFIKPQHFQQQQRYTEYCLDERLSTVSRYLYGISELSLNPEYLSFGRIAIER 64
           + VIW EG+ ++PQH Q   RY    L+ R   +S   +G   L L+ +YL+ G++ + +
Sbjct: 4   HNVIWQEGMLLRPQHLQHNDRYYHRQLN-RTRLLSSDAWGFLTLDLDLQYLNLGKVVVNQ 62

Query: 65  AVGVMPDGTTFRIPQEDHLPDALEVTDASLANQIVYLAVPLRSESLMEINWPEERGT-GR 123
           A GV+PDG+ F +      P  L+V  A+   Q VYLA+PL +E+ +E+   E+     R
Sbjct: 63  ASGVLPDGSLFELSGAME-PLVLQVP-ANAGRQAVYLALPLATENQVEVRRKEQSDVLAR 120

Query: 124 YVSRRLEVRDVHSVQGDTTTIDVSPVRLQLML-EREDRSAYASIAIGRILEKRPDGSVVL 182
           YV+   E+ D ++       I+ +   L+LML E    + Y  + + ++ +   +  V L
Sbjct: 121 YVACETEIGDSNAGADSRCQINCARPDLRLMLGEGPSDAFYVKLQVAQVQDSTREDGVSL 180

Query: 183 DPDFIPCHLNVVGISALHRFINEMSGLMRERAKNIAQRISSPAQGGVADVSDFMLLQALN 242
           D DF+P  + + G   +   I E+  L+  R   IA RI        A V DF++LQ +N
Sbjct: 181 DADFVPTFIYLQGTGYVSSCIKEVISLLATRGDAIAARIQGSGASTGAQVGDFLMLQLIN 240

Query: 243 RLQPQMKHLAELRSLHPERLFECLSCVCGELATFTDESRLPPSLPSYNHDSPSHSFQPLI 302
           R +  ++H      + PERL+  L  + GEL+TF ++++       Y H     SF+ L+
Sbjct: 241 RAELILRHYLVQAQVRPERLYRELLSILGELSTFANDNKRAQLAVHYRHGDQGASFRGLM 300

Query: 303 RSLRQSLSVVLEPRAVSIQLDKRKYGLMVAPIHDPQLMESAEFIIAVKARMPLDELRRLF 362
             LR  LS VLE  A+ + L +R+YG++V P+ D +L+ +A FI+A  A+   +ELR   
Sbjct: 301 EGLRTVLSSVLEQHAIELVLQQRQYGVLVCPVSDLKLLGTATFILAATAQCDSEELRHRL 360

Query: 363 TQQTKVASVEKIRELISLQLPGIPLTPLPVAPRQLPYHAGYTYYQLDKTSAAWAMLTHSS 422
               K+  VE+IREL++L L GI + PLPVAPRQ+PYHA  TY+ L+ +    A L  S 
Sbjct: 361 PAHLKIGPVERIRELVNLHLAGIKVQPLPVAPRQIPYHAAKTYFMLELSPRDIAQLEQSG 420

Query: 423 GFAFHVAAAFDDLELQFWAIRS 444
           GFAFH +  F +LEL FWAIR+
Sbjct: 421 GFAFHASGEFAELELNFWAIRN 442