Pairwise Alignments

Query, 444 a.a., type VI secretion system baseplate subunit TssK from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., T6SS component TssK (ImpJ/VasE) from Variovorax sp. SCN45

 Score =  320 bits (821), Expect = 5e-92
 Identities = 170/441 (38%), Positives = 272/441 (61%), Gaps = 5/441 (1%)

Query: 5   NRVIWNEGLFIKPQHFQQQQRYTEYCLDERLSTVSRYLYGISELSLNPEYLSFGRIAIER 64
           NRV+W+EG++++PQHFQQ +RY E  +  R + +    +G   L ++ +  + GR+++  
Sbjct: 20  NRVVWSEGMYLRPQHFQQLERYVEQYVTRRTAGLQGAYWGWLHLEIDRDAYALGRVSLLG 79

Query: 65  AVGVMPDGTTFRIPQEDHLPDALEVTDASLANQIVYLAVPLRSESLMEINWPEERGTG-R 123
             GV+PDGT F    ED  P   EV +  L ++++ LA+PLR     E+ + E+ G+  R
Sbjct: 80  GAGVLPDGTPFSFGAED-APLPYEVPN-DLTDELIVLALPLRRPGSEEVIFAEDEGSAAR 137

Query: 124 YVSRRLEVRDVHSVQGDTTTIDVSPVRLQLMLEREDRSAYASIAIGRILEKRPDGSVVLD 183
           +     EV D ++V      + ++  RL+L       + + +I   R++E+R D  +V+D
Sbjct: 138 FGVIEREVNDGNAVALGPAVLQLAAPRLRLARASSLTAEWQAIGAVRVIERRTDHKLVVD 197

Query: 184 PDFIPCHLNVVGISALHRFINEMSGLMRERAKNIAQRISSPAQGGVADVSDFMLLQALNR 243
            ++IP  L+    + L   I E+ GL+ +R++ +A R+S P +GGV++VSDF+LL+ +NR
Sbjct: 198 ANYIPPVLDASAHTMLRSMIAELHGLLTQRSEALASRLSQPGRGGVSEVSDFLLLELVNR 257

Query: 244 LQPQMKHLAELRSLHPERLF-ECLSCVCGELATFTDESRLPPSLPSYNHDSPSHSFQPLI 302
                 H  +   +HPE+LF + L   C  LAT T  +R P   P Y+HD+ + S +PL+
Sbjct: 258 YLALTWHAQQAVQVHPEQLFTDWLKLAC-HLATHTSPTRRPVLWPVYDHDNLNESIRPLM 316

Query: 303 RSLRQSLSVVLEPRAVSIQLDKRKYGLMVAPIHDPQLMESAEFIIAVKARMPLDELRRLF 362
             LR+SLS VLE  A++I+L++R +G+ V  + DP L+ +A F++AV A +P D +++ F
Sbjct: 317 EELRRSLSAVLEQSAIAIELEERSHGVRVGRMPDPVLVRNAGFVLAVHADLPADAIQQRF 376

Query: 363 TQQTKVASVEKIRELISLQLPGIPLTPLPVAPRQLPYHAGYTYYQLDKTSAAWAMLTHSS 422
             Q K+ SVE+IR+L+ LQLPG+ + PLPVAPRQ+PY+AGY Y++LDK+   W  L  S 
Sbjct: 377 PTQVKIGSVERIRDLVQLQLPGVTVRPLPVAPRQIPYNAGYHYFELDKSGDMWRQLEKSG 436

Query: 423 GFAFHVAAAFDDLELQFWAIR 443
           G A H+A  F  L ++FWAIR
Sbjct: 437 GVAMHLAGDFPGLAMEFWAIR 457