Pairwise Alignments

Query, 444 a.a., type VI secretion system baseplate subunit TssK from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., hypothetical protein from Escherichia fergusonii Becca

 Score =  151 bits (381), Expect = 5e-41
 Identities = 119/443 (26%), Positives = 204/443 (46%), Gaps = 9/443 (2%)

Query: 5   NRVIWNEGLFIKPQHFQQQQRYTEYCLDERLSTVSRYLYGISELSLNPEYLSFGRIAIER 64
           +R +W EG F+  Q FQQQ R+  +  D       R+ +GI+ +  + + L+ G++  + 
Sbjct: 4   HRPLWAEGTFLSSQQFQQQARWEAFSNDCIAQLCIRHPWGIANVLFDRDALTPGKLKTQA 63

Query: 65  AVGVMPDGTTFRIPQEDHLPDALEVTDASLANQIVYLAVPLRSESLMEINWPEERGTGRY 124
                 DGT       D LP A ++      + IV LA+PL   +   +   E+  T R 
Sbjct: 64  VRLRFADGTLIDSDVSDVLPLACDLRALKNDSAIVLLALPLAHGNGGNLGQGEQ--TERP 121

Query: 125 VSRRLEVRDVHSVQG-DTTTIDVSPVRLQLMLEREDRSAYASIAIGRILEKRPDGSVVLD 183
           +  R E + V  + G D+  + V    L L    ++   Y +  + R++ +   G+   D
Sbjct: 122 LRYRQEWQKVQDIYGSDSEDMAVERHALSLRFAHDNNQDYITCPLARLV-RDVQGNWTQD 180

Query: 184 PDFIPCHLNVVGISALHRFINEMSGLMRERAKNI-AQRISSP---AQGGVADVSDFMLLQ 239
             +IP  L       L + ++ +   +R + + + A R  S    A   VADVS F LL 
Sbjct: 181 ESYIPPLLAFNAHDGLVQRLDTLLLQLRAKCQRLMAMRRESNQRMADFAVADVSLFWLLN 240

Query: 240 ALNRLQPQMKHLAELRSLHPERLFECLSCVCGELATFTDESRLPPSLPSYNHDSPSHSFQ 299
           ALN  +P +       ++HPE ++  L+ + G L TF+ E  +  ++P Y H+SPS  F 
Sbjct: 241 ALNSAEPVLSDFLRYPAVHPELVWRELARLAGALLTFSLEHNVS-AVPPYVHESPSTVFP 299

Query: 300 PLIRSLRQSLSVVLEPRAVSIQLDKRKYGLMVAPIHDPQLMESAEFIIAVKARMPLDELR 359
           PL   L + L   L  R +++ L         A +HDP+L E A+F ++V++ +P  ++ 
Sbjct: 300 PLFSLLSELLEASLPSRVIALDLASLPGNRWKADLHDPRLREEADFYLSVRSSLPAHQVL 359

Query: 360 RLFTQQTKVASVEKIRELISLQLPGIPLTPLPVAPRQLPYHAGYTYYQLDKTSAAWAMLT 419
                  K+ + + +  LI++ L G+ L PL   P  LP      Y+ LD  S A   + 
Sbjct: 360 HQLPLVCKIGAPDDVTLLINVALNGVQLVPLTSVPAALPLRLENQYFALDMHSDAAKSML 419

Query: 420 HSSGFAFHVAAAFDDLELQFWAI 442
            S     +      DL+ + +A+
Sbjct: 420 ESGSCMIYAPGTMGDLKPELFAV 442