Pairwise Alignments

Query, 338 a.a., type VI secretion system baseplate subunit TssG from Vibrio cholerae E7946 ATCC 55056

Subject, 347 a.a., type VI secretion protein from Pseudomonas simiae WCS417

 Score =  105 bits (263), Expect = 1e-27
 Identities = 88/317 (27%), Positives = 145/317 (45%), Gaps = 17/317 (5%)

Query: 30  EYNFYQLVELLQKLADINPESEEWERDCRLV-----FSANPSLGFSPSDVMALEARDDER 84
           EY+F+Q    L+++   +P+        RL              F+P+ + +++   D +
Sbjct: 24  EYDFFQA---LRRIECESPDLPRLGHSLRLADDPLRLGQQADCTFAPATLASVDPGGDGK 80

Query: 85  WVMLTNFF-GLSGAQSPLPGFILEQLVTEEPGGY---KQPFLDFFNNRLINLVYRVWRKY 140
              L  FF GL G   PLP  I E +   +        + FLD F++RL++L YR W + 
Sbjct: 81  PARLEQFFFGLGGPNGPLPLHITEYVRERQRNNADSTSKQFLDVFHHRLLSLFYRAWAEA 140

Query: 141 RYYVRFQPGAQDVFSAQLFALVGLGDPDLRGETPINWCKMLAYAGTLAGRSRSPQVVAGI 200
           R  V       D +SA+L AL G G P L  +  I     L Y+G L+ ++R P  +  I
Sbjct: 141 RPTVSHDRPDDDYWSARLAALSGRGMPSLLNQGLIPDTAKLHYSGHLSAQTRYPDGLKAI 200

Query: 201 IAHCFDLPDVSIRQWVRRRVSIDRSQQLALGKQNARLGMDTVIGESVIDCSGKFIICIKR 260
           +   F LP V I ++V + + +    ++++     RLG+D  +G  V D   KF I +  
Sbjct: 201 LGEYFGLP-VEIEEYVGQWLELPERSRVSVSAN--RLGVDFCLGSFVWDRQHKFRIRLGP 257

Query: 261 LSRSRFADFLPSGKEYQPLCKLVEFILREQMAYDLELAMDEREAPLFCLDTRQNIALGWT 320
           L+   +   LP  + +  L   V   L  ++ +DL L + + E P   L       LG+ 
Sbjct: 258 LTLEDYMGMLPGQQPFNELVAWVAEYLGHELDWDLNLVLQQPEVP--ALQLNGQFRLGFN 315

Query: 321 SFLGQDAANKHVLIQVR 337
           ++LG  A + + LI  R
Sbjct: 316 TWLGSPAHDANDLILAR 332