Pairwise Alignments

Query, 338 a.a., type VI secretion system baseplate subunit TssG from Vibrio cholerae E7946 ATCC 55056

Subject, 337 a.a., type VI secretion protein from Pseudomonas simiae WCS417

 Score =  194 bits (493), Expect = 3e-54
 Identities = 123/327 (37%), Positives = 177/327 (54%), Gaps = 6/327 (1%)

Query: 14  SDPAQASPLS-LPGNVREYNFYQLV-ELLQKLADINPESEEWERDCRLVFSANPSLGFSP 71
           +D A A  L+ L  ++REY+ +Q V +++++L   +P  +E      L F ANP LGF  
Sbjct: 4   TDGAAAPALTRLSLSIREYSLFQAVLQVIKRLRVAHPLLDEDALYDLLEFHANPGLGFPG 63

Query: 72  SDVMALE---ARDDERWVMLTNFFGLSGAQSPLPGFILEQLVTEEPGGYK-QPFLDFFNN 127
            D+  +E     +  R  +  N  GL GA SPLP F  EQ   +  GG   + FLD F++
Sbjct: 64  HDIDRVEFFIEHEQLRARLRLNLLGLCGAGSPLPAFYGEQACADGVGGNTTRDFLDVFHH 123

Query: 128 RLINLVYRVWRKYRYYVRFQPGAQDVFSAQLFALVGLGDPDLRGETPINWCKMLAYAGTL 187
           RL  L+  VWRKYRY  RFQ GA+D FS Q+FAL+GL    +R    +N  ++L Y G L
Sbjct: 124 RLQRLMLPVWRKYRYRARFQAGARDTFSEQMFALIGLSGQQIRSIARLNCERLLPYLGML 183

Query: 188 AGRSRSPQVVAGIIAHCFDLPDVSIRQWVRRRVSIDRSQQLALGKQNARLGMDTVIGESV 247
             RS S  ++  ++ + F    + I QWV R V ID  Q+  LG  N+ LG D V+G  V
Sbjct: 184 GLRSHSASLIETVLRYYFKHHRLFIEQWVLRTVVIDDPQRNRLGNANSVLGHDQVLGCRV 243

Query: 248 IDCSGKFIICIKRLSRSRFADFLPSGKEYQPLCKLVEFILREQMAYDLELAMDEREAPLF 307
            D SGKF + ++ L   +   FLP+G +Y  LC LV    R+ + YDL L + + E    
Sbjct: 244 ADRSGKFRVHLQGLGWQQLHGFLPTGADYPLLCSLVRLTARDPLEYDLRLVLAKEEIRPL 303

Query: 308 CLDTRQNIALGWTSFLGQDAANKHVLI 334
            +       LGWTS+L  + A+  V++
Sbjct: 304 HIGEHNVCGLGWTSWLAHECADGVVMV 330